Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0050249.1

Overview

Field Value
Gene ID Lj0g3v0050249
Transcript ID Lj0g3v0050249.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 87 87 – –
PANTHER
PTHR24031
5 572 568 0 –
PANTHER
PTHR24031:SF301
5 572 568 0 –
Coils
Coil
13 33 21 – –
Gene3D
G3DSA:3.40.50.300
79 307 229 6.10E-69
IPR027417
ProSiteProfiles
PS51195
90 118 29 9.817
IPR014014
CDD
cd00268
92 297 206 4.67E-83 –
SMART
SM00487
109 314 206 6.30E-53
IPR014001
Pfam
PF00270
114 285 172 4.10E-43
IPR011545
ProSiteProfiles
PS51192
121 296 176 29.598
IPR014001
SUPERFAMILY
SSF52540
162 453 292 2.74E-60
IPR027417
ProSitePatterns
PS00039
242 250 9 –
IPR000629
Gene3D
G3DSA:3.40.50.300
308 459 152 6.50E-41
IPR027417
CDD
cd00079
311 440 130 2.04E-31 –
ProSiteProfiles
PS51194
323 480 158 19.671
IPR001650
Pfam
PF00271
324 430 107 5.00E-24
IPR001650
SMART
SM00490
350 431 82 6.40E-25
IPR001650
SMART
SM01178
471 534 64 4.30E-28
IPR025313
Pfam
PF13959
472 532 61 5.30E-19
IPR025313
MobiDBLite
mobidb-lite
539 569 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0050249.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0050249.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.