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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0055669 |
| Transcript ID | Lj0g3v0055669.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: chloride channel protein CLC-b-like [Glycine max] gi|356571521|ref|XP_003553925.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 87 | 87 | – | – | |
| PANTHER | 3 | 394 | 392 | 0 | – | |
| PANTHER | 3 | 394 | 392 | 0 | – | |
| CDD | 59 | 583 | 525 | 0 | – | |
| PRINTS | 64 | 72 | 9 | 4.10E-22 | ||
| SUPERFAMILY | 68 | 395 | 328 | 8.89E-102 | ||
| Gene3D | 76 | 395 | 320 | 1.30E-124 | ||
| TMHMM | 86 | 108 | 23 | – | – | |
| Phobius | 88 | 112 | 25 | – | – | |
| Phobius | 113 | 132 | 20 | – | – | |
| Phobius | 133 | 161 | 29 | – | – | |
| TMHMM | 136 | 158 | 23 | – | – | |
| Pfam | 146 | 564 | 419 | 1.40E-92 | ||
| PRINTS | 159 | 176 | 18 | 4.20E-60 | ||
| Phobius | 162 | 180 | 19 | – | – | |
| TMHMM | 179 | 201 | 23 | – | – | |
| Phobius | 181 | 202 | 22 | – | – | |
| PRINTS | 190 | 209 | 20 | 4.20E-60 | ||
| Phobius | 203 | 247 | 45 | – | – | |
| Phobius | 248 | 272 | 25 | – | – | |
| TMHMM | 248 | 270 | 23 | – | – | |
| PRINTS | 254 | 273 | 20 | 4.20E-60 | ||
| Phobius | 273 | 277 | 5 | – | – | |
| PRINTS | 275 | 283 | 9 | 4.10E-22 | ||
| Phobius | 278 | 298 | 21 | – | – | |
| TMHMM | 282 | 304 | 23 | – | – | |
| PRINTS | 289 | 299 | 11 | 4.10E-22 | ||
| Phobius | 299 | 309 | 11 | – | – | |
| PRINTS | 307 | 314 | 8 | 4.10E-22 | ||
| Phobius | 310 | 329 | 20 | – | – | |
| Phobius | 330 | 334 | 5 | – | – | |
| TMHMM | 333 | 355 | 23 | – | – | |
| Phobius | 335 | 355 | 21 | – | – | |
| Phobius | 356 | 374 | 19 | – | – | |
| TMHMM | 375 | 394 | 20 | – | – | |
| Phobius | 375 | 396 | 22 | – | – | |
| Phobius | 397 | 460 | 64 | – | – | |
| PANTHER | 426 | 783 | 358 | 0 | – | |
| PANTHER | 426 | 783 | 358 | 0 | – | |
| PRINTS | 434 | 450 | 17 | 4.10E-22 | ||
| Gene3D | 439 | 589 | 151 | 1.30E-124 | ||
| SUPERFAMILY | 439 | 585 | 147 | 8.89E-102 | ||
| Phobius | 461 | 494 | 34 | – | – | |
| TMHMM | 466 | 488 | 23 | – | – | |
| PRINTS | 482 | 502 | 21 | 4.20E-60 | ||
| Phobius | 495 | 514 | 20 | – | – | |
| PRINTS | 514 | 530 | 17 | 4.20E-60 | ||
| Phobius | 515 | 540 | 26 | – | – | |
| PRINTS | 532 | 551 | 20 | 4.20E-60 | ||
| TMHMM | 535 | 557 | 23 | – | – | |
| Phobius | 541 | 545 | 5 | – | – | |
| Phobius | 546 | 563 | 18 | – | – | |
| Phobius | 564 | 783 | 220 | – | – | |
| PRINTS | 570 | 584 | 15 | 4.20E-60 | ||
| SUPERFAMILY | 587 | 768 | 182 | 8.97E-20 | – | |
| Gene3D | 591 | 669 | 79 | 6.20E-11 | – | |
| ProSiteProfiles | 602 | 671 | 70 | 7.236 | ||
| SMART | 605 | 664 | 60 | 2.7 | ||
| CDD | 612 | 769 | 158 | 1.29E-16 | – | |
| Gene3D | 703 | 767 | 65 | 6.20E-11 | – | |
| ProSiteProfiles | 715 | 780 | 66 | 9.521 | ||
| Pfam | 717 | 767 | 51 | 0.0022 | ||
| SMART | 718 | 771 | 54 | 1.2 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Voltage-gated chloride channel activity | Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0055669.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0055669.1, powered by CORGI.
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