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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011761
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We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.264s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036439.1
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 11645213 11646756 -
2 domain predictions
2 GO terms
Lj0g3v0056779.2
n.a. D-alanine--D-alanine ligase [Medicago truncatula] gi|357506461|ref|XP_003623519.1| chr0 18504005 18516590 -
2 domain predictions
2 GO terms
Lj0g3v0056779.3
n.a. D-alanine--D-alanine ligase [Medicago truncatula] gi|357506461|ref|XP_003623519.1| chr0 18504005 18516590 -
2 domain predictions
2 GO terms
Lj0g3v0076349.1
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 29076002 29077861 +
2 domain predictions
2 GO terms
Lj0g3v0077959.1
n.a. Carbamoyl-phosphate synthase large chain [Medicago truncatula] gi|357453751|ref|XP_003597156.1| chr0 29996981 30002351 +
2 domain predictions
2 GO terms
Lj0g3v0078859.2
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 30414696 30421656 -
2 domain predictions
2 GO terms
Lj1g3v2418700.1
n.a. D-alanine--D-alanine ligase [Medicago truncatula] gi|357506461|ref|XP_003623519.1| chr1 28388730 28401927 -
2 domain predictions
2 GO terms
Lj1g3v2418700.2
n.a. D-alanine--D-alanine ligase [Medicago truncatula] gi|357506461|ref|XP_003623519.1| chr1 28388730 28401927 -
2 domain predictions
2 GO terms
Lj4g3v1477230.1
n.a. inositol phosphate kinase [Glycine max] gi|351721472|ref|NP_001237466.1| chr4 22620694 22622133 -
2 domain predictions
2 GO terms
Lj4g3v3015020.1
n.a. PREDICTED: biotin carboxylase 1, chloroplastic-like [Cicer arietinum] gi|502138858|ref|XP_004503555.1| chr4 40296573 40303908 -
2 domain predictions
2 GO terms
Lj5g3v1003320.1
n.a. PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X2 [Cicer arietinum] gi|502115337|ref|XP_004495179.1| chr5 15781280 15787890 -
2 domain predictions
2 GO terms
Lj5g3v1118370.1
n.a. succinyl-CoA ligase beta subunit [Caragana jubata] gi|146215968|gb|ABQ10186.1| chr5 17844201 17848743 -
2 domain predictions
2 GO terms
Lj5g3v2263910.1
n.a. PREDICTED: phosphoribosylamine--glycine ligase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502123844|ref|XP_004498282.1| chr5 33014193 33017626 -
2 domain predictions
2 GO terms
LotjaGi1g1v0246300.2
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59093162 59109061 +
2 domain predictions
2 GO terms
LotjaGi1g1v0246300.3
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59093322 59109042 +
2 domain predictions
2 GO terms
LotjaGi1g1v0246300.4
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|I1JVH6|I1JVH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59094710 59108673 +
2 domain predictions
2 GO terms
LotjaGi1g1v0246300.5
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59094710 59108673 +
2 domain predictions
2 GO terms
LotjaGi1g1v0450300.1
n.a. D-alanine--D-alanine ligase; TAIR: AT3G08840.2 D-alanine-D-alanine ligase family; Swiss-Prot: sp|Q6MQ94|DDL_BDEBA D-alanine--D-alanine ligase; TrEMBL-Plants: tr|I1L754|I1L754_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0450300 LjG1.1_chr1 94928491 94945102 -
2 domain predictions
2 GO terms
LotjaGi3g1v0161000.1
n.a. Carbamoyl-phosphate synthase large chain; TAIR: AT1G29900.1 carbamoyl phosphate synthetase B; Swiss-Prot: sp|Q42601|CARB_ARATH Carbamoyl-phosphate synthase large chain, chloroplastic; TrEMBL-Plants: tr|G7IU57|G7IU57_MEDTR Carbamoyl-phosphate synthase large chain; Found in the gene: LotjaGi3g1v0161000 LjG1.1_chr3 21905271 21910734 -
2 domain predictions
2 GO terms
LotjaGi4g1v0439600.1
n.a. Biotin carboxylase; TAIR: AT5G35360.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit; Swiss-Prot: sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic; TrEMBL-Plants: tr|O23960|O23960_SOYBN Acetyl-CoA carboxylase; Found in the gene: LotjaGi4g1v0439600 LjG1.1_chr4 81327820 81335253 -
2 domain predictions
2 GO terms
LotjaGi4g1v0439600.2
n.a. Biotin carboxylase; TAIR: AT5G35360.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit; Swiss-Prot: sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic; TrEMBL-Plants: tr|O23960|O23960_SOYBN Acetyl-CoA carboxylase; Found in the gene: LotjaGi4g1v0439600 LjG1.1_chr4 81329353 81335044 -
2 domain predictions
2 GO terms
LotjaGi5g1v0154600.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT2G20420.1 ATP citrate lyase (ACL) family protein; Swiss-Prot: sp|O82662|SUCB_ARATH Succinate--CoA ligase [ADP]-forming] subunit beta, mitochondrial; TrEMBL-Plants: tr|A5HIG2|A5HIG2_9FABA Succinate-CoA ligase subunit beta; Found in the gene: LotjaGi5g1v0154600 LjG1.1_chr5 40153201 40158211 +
2 domain predictions
2 GO terms
LotjaGi5g1v0170200.1
n.a. Acetyl-CoA carboxylase, putative; TAIR: AT1G03090.2 methylcrotonyl-CoA carboxylase alpha chain; Swiss-Prot: sp|Q42777|MCCA_SOYBN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; TrEMBL-Plants: tr|A0A151QXF8|A0A151QXF8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0170200 LjG1.1_chr5 43773156 43782290 -
2 domain predictions
2 GO terms
LotjaGi5g1v0211000.1
n.a. Formate-dependent phosphoribosylglycinamide formyltransferase; TAIR: AT2G37690.1 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase; Swiss-Prot: sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic; TrEMBL-Plants: tr|K7LJS8|K7LJS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211000 LjG1.1_chr5 51522479 51529430 -
2 domain predictions
2 GO terms
LotjaGi5g1v0354900.1
n.a. Phosphoribosylamine-glycine ligase; TAIR: AT1G09830.1 Glycinamide ribonucleotide (GAR) synthetase; Swiss-Prot: sp|P52420|PUR2_ARATH Phosphoribosylamine--glycine ligase, chloroplastic; TrEMBL-Plants: tr|K7LJM6|K7LJM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354900 LjG1.1_chr5 67035087 67038946 -
2 domain predictions
2 GO terms