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Lj0g3v0057889.1

Overview

Field Value
Gene ID Lj0g3v0057889
Transcript ID Lj0g3v0057889.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: GTPase obg-like [Glycine max] gi|356551819|ref|XP_003544271.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11702
43 84 42 5.00E-137 –
PANTHER
PTHR11702:SF3
43 84 42 5.00E-137
IPR014100
Gene3D
G3DSA:2.70.210.12
67 251 185 4.30E-23
IPR006169
SUPERFAMILY
SSF82051
68 224 157 7.19E-19
IPR006169
Pfam
PF01018
70 254 185 7.90E-21
IPR006169
PANTHER
PTHR11702:SF3
102 409 308 5.00E-137
IPR014100
PANTHER
PTHR11702
102 409 308 5.00E-137 –
Gene3D
G3DSA:3.40.50.300
257 390 134 1.40E-47
IPR027417
ProSiteProfiles
PS51710
257 468 212 61.303
IPR031167
CDD
cd01898
257 398 142 2.28E-55 –
Pfam
PF01926
258 385 128 2.60E-24
IPR006073
SUPERFAMILY
SSF52540
258 406 149 5.16E-42
IPR027417
PRINTS
PR00326
259 279 21 2.10E-33
IPR006073
PRINTS
PR00326
280 298 19 2.10E-33
IPR006073
PRINTS
PR00326
315 330 16 2.10E-33
IPR006073
ProSitePatterns
PS00905
317 330 14 –
IPR006074
PRINTS
PR00326
332 350 19 2.10E-33
IPR006073
PANTHER
PTHR11702:SF3
439 469 31 5.00E-137
IPR014100
PANTHER
PTHR11702
439 469 31 5.00E-137 –
Gene3D
G3DSA:3.40.50.300
442 471 30 1.40E-47
IPR027417
SUPERFAMILY
SSF52540
442 467 26 5.16E-42
IPR027417
Coils
Coil
456 476 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj0g3v0057889.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0057889.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.