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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0088939 |
| Transcript ID | Lj0g3v0088939.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 10-like [Glycine max] gi|356561462|ref|XP_003549000.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1069 | 1069 | 0 | – | |
| Phobius | 1 | 55 | 55 | – | – | |
| PANTHER | 1 | 1069 | 1069 | 0 | – | |
| ProSiteProfiles | 1 | 214 | 214 | 24.889 | ||
| Pfam | 2 | 201 | 200 | 1.00E-17 | ||
| Gene3D | 3 | 232 | 230 | 3.20E-15 | – | |
| SUPERFAMILY | 5 | 232 | 228 | 1.44E-20 | ||
| Phobius | 56 | 87 | 32 | – | – | |
| TMHMM | 64 | 86 | 23 | – | – | |
| Phobius | 88 | 154 | 67 | – | – | |
| Phobius | 155 | 180 | 26 | – | – | |
| Phobius | 181 | 199 | 19 | – | – | |
| Phobius | 200 | 219 | 20 | – | – | |
| Phobius | 220 | 541 | 322 | – | – | |
| SUPERFAMILY | 243 | 473 | 231 | 6.63E-56 | ||
| CDD | 249 | 450 | 202 | 2.79E-105 | – | |
| ProSiteProfiles | 251 | 473 | 223 | 22.796 | ||
| Gene3D | 253 | 480 | 228 | 7.90E-67 | ||
| Pfam | 268 | 402 | 135 | 6.30E-23 | ||
| SMART | 277 | 450 | 174 | 1.20E-16 | ||
| ProSitePatterns | 375 | 389 | 15 | – | ||
| MobiDBLite | 478 | 500 | 23 | – | – | |
| SUPERFAMILY | 530 | 839 | 310 | 6.28E-45 | ||
| Phobius | 542 | 562 | 21 | – | – | |
| Gene3D | 545 | 837 | 293 | 1.10E-48 | – | |
| TMHMM | 545 | 567 | 23 | – | – | |
| Pfam | 559 | 802 | 244 | 4.00E-23 | ||
| ProSiteProfiles | 559 | 822 | 264 | 25.718 | ||
| Phobius | 563 | 581 | 19 | – | – | |
| TMHMM | 580 | 602 | 23 | – | – | |
| Phobius | 582 | 607 | 26 | – | – | |
| Phobius | 608 | 644 | 37 | – | – | |
| Phobius | 645 | 664 | 20 | – | – | |
| Phobius | 665 | 669 | 5 | – | – | |
| TMHMM | 670 | 692 | 23 | – | – | |
| Phobius | 670 | 692 | 23 | – | – | |
| Phobius | 693 | 770 | 78 | – | – | |
| Phobius | 771 | 804 | 34 | – | – | |
| TMHMM | 774 | 796 | 23 | – | – | |
| Phobius | 805 | 1069 | 265 | – | – | |
| SUPERFAMILY | 849 | 1069 | 221 | 5.01E-58 | ||
| CDD | 857 | 1069 | 213 | 1.43E-116 | – | |
| Gene3D | 858 | 1069 | 212 | 2.60E-56 | ||
| ProSiteProfiles | 859 | 1069 | 211 | 12.112 | ||
| Pfam | 876 | 1023 | 148 | 2.30E-28 | ||
| SMART | 885 | 1068 | 184 | 1.50E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0088939.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0088939.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.