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Lj0g3v0106869.1

Overview

Field Value
Gene ID Lj0g3v0106869
Transcript ID Lj0g3v0106869.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 2 [Glycine max] gi|356530858|ref|XP_003533996.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11203
23 38 16 1.10E-74 –
PANTHER
PTHR11203:SF5
23 38 16 1.10E-74
IPR027075
Coils
Coil
29 49 21 – –
SUPERFAMILY
SSF56281
101 240 140 1.49E-25
IPR001279
PANTHER
PTHR11203
170 370 201 1.10E-74 –
PANTHER
PTHR11203:SF5
170 370 201 1.10E-74
IPR027075
Pfam
PF07521
171 222 52 2.20E-12
IPR011108
Pfam
PF13299
281 374 94 1.00E-19
IPR025069

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005847
Cellular component MRNA cleavage and polyadenylation specificity factor complex A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal.
Subterm of
GO:0006378
Biological process MRNA polyadenylation The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
Subterm of
GO:0006379
Biological process MRNA cleavage Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0106869.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0106869.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.