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Lj0g3v0107099.1

Overview

Field Value
Gene ID Lj0g3v0107099
Transcript ID Lj0g3v0107099.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine max] gi|356518852|ref|XP_003528091.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 62 62 – –
PANTHER
PTHR10335
7 266 260 1.50E-195 –
PIRSF
PIRSF006540
32 266 235 1.10E-106
IPR000692
Gene3D
G3DSA:3.30.200.20
60 116 57 1.00E-27 –
SUPERFAMILY
SSF53335
65 264 200 1.58E-46
IPR029063
SMART
SM01206
65 266 202 1.10E-141
IPR000692
Pfam
PF01269
65 266 202 3.10E-97
IPR000692
PRINTS
PR00052
84 103 20 6.60E-78
IPR000692
PRINTS
PR00052
112 131 20 6.60E-78
IPR000692
Gene3D
G3DSA:3.40.50.150
117 265 149 1.50E-52
IPR029063
PRINTS
PR00052
139 160 22 6.60E-78
IPR000692
PRINTS
PR00052
164 181 18 6.60E-78
IPR000692
ProSitePatterns
PS00566
164 178 15 –
IPR020813
PRINTS
PR00052
189 218 30 6.60E-78
IPR000692
PRINTS
PR00052
219 248 30 6.60E-78
IPR000692

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj0g3v0107099.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0107099.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.