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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000692
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.119s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0107099.1
n.a. PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine max] gi|356518852|ref|XP_003528091.1| chr0 46151698 46155302 +
5 domain predictions
3 GO terms
Lj0g3v0201389.1
n.a. Fibrillarin [Medicago truncatula] gi|357444829|ref|XP_003592692.1| chr0 99580203 99581663 +
5 domain predictions
3 GO terms
Lj5g3v0391280.1
n.a. rRNA 2'-O-methyltransferase fibrillarin 2 [Triticum urartu] gi|473947937|gb|EMS50585.1| chr5 3629754 3631615 +
4 domain predictions
3 GO terms
LotjaGi1g1v0018400.1
n.a. rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400 LjG1.1_chr1 2256132 2259513 -
6 domain predictions
3 GO terms
LotjaGi1g1v0018400.2
n.a. rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400 LjG1.1_chr1 2256681 2259134 -
6 domain predictions
3 GO terms
LotjaGi1g1v0018400.3
n.a. rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400 LjG1.1_chr1 2256681 2259341 -
6 domain predictions
3 GO terms
LotjaGi2g1v0122000.1
n.a. rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp|Q94AH9|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr|I3SKZ0|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122000 LjG1.1_chr2 44977735 44982855 +
6 domain predictions
3 GO terms
LotjaGi5g1v0041200.1
n.a. rRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT5G52470.1 fibrillarin 1; Swiss-Prot: sp|Q9FEF8|MD36B_ARATH Probable mediator of RNA polymerase II transcription subunit 36b; TrEMBL-Plants: tr|A0A072U8T6|A0A072U8T6_MEDTR Mediator of RNA polymerase II transcription subunit 36a; Found in the gene: LotjaGi5g1v0041200 LjG1.1_chr5 6909383 6912126 +
5 domain predictions
3 GO terms