Domain Predictions — View

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PF01269

Source: Pfam

Description

Fibrillarin

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of GO:0003676
GO:0006364 View details of GO:0006364 AmiGO InterPro QuickGO	Biological process	RRNA processing	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.	Subterm of GO:0016072 GO:0034470 Part of GO:0042254
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of GO:0016741

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0107099.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine max] gi\|356518852\|ref\|XP_003528091.1\|	Domains G3DSA:3.30.200.20 G3DSA:3.40.50.150 IPR000692 IPR020813 IPR029063 PF01269 PIRSF006540 PR00052 PS00566 PTHR10335 SM01206 SSF53335 mobidb-lite	13
Lj0g3v0201389.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Fibrillarin [Medicago truncatula] gi\|357444829\|ref\|XP_003592692.1\|	Domains G3DSA:3.30.200.20 G3DSA:3.40.50.150 IPR000692 IPR020813 IPR029063 PF01269 PIRSF006540 PR00052 PS00566 PTHR10335 SM01206 SSF53335 mobidb-lite	13
Lj5g3v0391280.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA 2'-O-methyltransferase fibrillarin 2 [Triticum urartu] gi\|473947937\|gb\|EMS50585.1\|	Domains G3DSA:3.40.50.150 IPR000692 IPR029063 NON_CYTOPLASMIC_DOMAIN PF01269 PR00052 PTHR10335 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM01206 SSF53335	13
LotjaGi1g1v0018400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp\|Q94AH9\|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr\|I3SKZ0\|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400	Domains G3DSA:3.30.200.20 G3DSA:3.40.50.150 IPR000692 IPR020813 IPR029063 MF_00351 PF01269 PIRSF006540 PR00052 PS00566 PTHR10335 PTHR10335:SF12 SM01206 SSF53335 mobidb-lite	15
LotjaGi1g1v0018400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp\|Q94AH9\|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr\|I3SKZ0\|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400	Domains G3DSA:3.30.200.20 G3DSA:3.40.50.150 IPR000692 IPR020813 IPR029063 MF_00351 PF01269 PIRSF006540 PR00052 PS00566 PTHR10335 PTHR10335:SF12 SM01206 SSF53335	14
LotjaGi1g1v0018400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp\|Q94AH9\|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr\|I3SKZ0\|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018400	Domains G3DSA:3.30.200.20 G3DSA:3.40.50.150 IPR000692 IPR020813 IPR029063 MF_00351 PF01269 PIRSF006540 PR00052 PS00566 PTHR10335 PTHR10335:SF12 SM01206 SSF53335	14
LotjaGi2g1v0122000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT4G25630.1 fibrillarin 2; Swiss-Prot: sp\|Q94AH9\|MD36A_ARATH Mediator of RNA polymerase II transcription subunit 36a; TrEMBL-Plants: tr\|I3SKZ0\|I3SKZ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122000	Domains G3DSA:3.30.200.20 G3DSA:3.40.50.150 IPR000692 IPR020813 IPR029063 MF_00351 PF01269 PIRSF006540 PR00052 PS00566 PTHR10335 PTHR10335:SF12 SM01206 SSF53335 mobidb-lite	15
LotjaGi5g1v0041200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RRNA 2'-O-methyltransferase fibrillarin 2; TAIR: AT5G52470.1 fibrillarin 1; Swiss-Prot: sp\|Q9FEF8\|MD36B_ARATH Probable mediator of RNA polymerase II transcription subunit 36b; TrEMBL-Plants: tr\|A0A072U8T6\|A0A072U8T6_MEDTR Mediator of RNA polymerase II transcription subunit 36a; Found in the gene: LotjaGi5g1v0041200	Domains G3DSA:3.30.200.20 G3DSA:3.40.50.150 IPR000692 IPR029063 PF01269 PIRSF006540 PR00052 PTHR10335 PTHR10335:SF12 SM01206 SSF53335	11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
SSF53335	SUPERFAMILY	1	12.50