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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0109429 |
| Transcript ID | Lj0g3v0109429.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 79 | 79 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| MobiDBLite | 1 | 36 | 36 | – | – | |
| PANTHER | 3 | 624 | 622 | 4.50E-238 | – | |
| ProSiteProfiles | 61 | 95 | 35 | 8.155 | ||
| Phobius | 80 | 104 | 25 | – | – | |
| ProSiteProfiles | 96 | 130 | 35 | 6.906 | ||
| Phobius | 105 | 712 | 608 | – | – | |
| ProSiteProfiles | 131 | 165 | 35 | 9.24 | ||
| Pfam | 138 | 161 | 24 | 0.011 | ||
| TIGRFAM | 138 | 167 | 30 | 1.10E-04 | ||
| Pfam | 165 | 214 | 50 | 9.70E-18 | ||
| Gene3D | 166 | 401 | 236 | 1.10E-09 | ||
| ProSiteProfiles | 166 | 200 | 35 | 12.792 | ||
| TIGRFAM | 168 | 201 | 34 | 3.00E-09 | ||
| SUPERFAMILY | 169 | 405 | 237 | 5.69E-07 | ||
| ProSiteProfiles | 201 | 235 | 35 | 12.518 | ||
| TIGRFAM | 203 | 236 | 34 | 9.10E-08 | ||
| Pfam | 232 | 263 | 32 | 1.90E-08 | ||
| ProSiteProfiles | 236 | 270 | 35 | 13.384 | ||
| TIGRFAM | 238 | 272 | 35 | 4.50E-09 | ||
| Pfam | 270 | 318 | 49 | 1.50E-17 | ||
| ProSiteProfiles | 271 | 305 | 35 | 13.417 | ||
| TIGRFAM | 273 | 307 | 35 | 1.20E-09 | ||
| ProSiteProfiles | 306 | 340 | 35 | 11.674 | ||
| TIGRFAM | 308 | 342 | 35 | 5.50E-07 | ||
| Pfam | 340 | 388 | 49 | 1.50E-17 | ||
| ProSiteProfiles | 341 | 375 | 35 | 13.548 | ||
| TIGRFAM | 344 | 377 | 34 | 1.00E-09 | ||
| ProSiteProfiles | 376 | 410 | 35 | 11.005 | ||
| TIGRFAM | 378 | 408 | 31 | 6.60E-06 | ||
| SUPERFAMILY | 390 | 478 | 89 | 4.45E-08 | – | |
| Pfam | 410 | 440 | 31 | 7.30E-10 | ||
| ProSiteProfiles | 413 | 447 | 35 | 12.266 | ||
| TIGRFAM | 415 | 448 | 34 | 5.60E-08 | ||
| Gene3D | 425 | 478 | 54 | 1.10E-05 | ||
| Pfam | 448 | 496 | 49 | 7.20E-16 | ||
| ProSiteProfiles | 448 | 482 | 35 | 11.477 | ||
| TIGRFAM | 450 | 483 | 34 | 5.00E-08 | ||
| ProSiteProfiles | 483 | 517 | 35 | 9.536 | ||
| Gene3D | 516 | 552 | 37 | 1.10E-05 | ||
| SUPERFAMILY | 517 | 642 | 126 | 4.45E-08 | – | |
| Pfam | 517 | 564 | 48 | 3.10E-13 | ||
| ProSiteProfiles | 518 | 552 | 35 | 11.849 | ||
| TIGRFAM | 522 | 554 | 33 | 2.20E-08 | ||
| ProSiteProfiles | 553 | 587 | 35 | 10.369 | ||
| TIGRFAM | 555 | 589 | 35 | 2.00E-05 | ||
| Pfam | 587 | 634 | 48 | 3.10E-09 | ||
| ProSiteProfiles | 588 | 622 | 35 | 12.54 | ||
| Gene3D | 589 | 614 | 26 | 1.10E-05 | ||
| TIGRFAM | 590 | 624 | 35 | 2.10E-09 | ||
| ProSiteProfiles | 623 | 657 | 35 | 9.372 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0109429.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0109429.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.