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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0109449 |
| Transcript ID | Lj0g3v0109449.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | – | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 12 | 12 | – | – | |
| PANTHER | 3 | 628 | 626 | 7.30E-238 | – | |
| Phobius | 13 | 21 | 9 | – | – | |
| Phobius | 22 | 29 | 8 | – | – | |
| MobiDBLite | 24 | 44 | 21 | – | – | |
| Phobius | 30 | 720 | 691 | – | – | |
| ProSiteProfiles | 64 | 98 | 35 | 8.966 | ||
| Pfam | 67 | 94 | 28 | 0.21 | ||
| TIGRFAM | 67 | 99 | 33 | 3.10E-04 | ||
| ProSiteProfiles | 99 | 133 | 35 | 7.256 | ||
| ProSiteProfiles | 134 | 169 | 36 | 8.923 | ||
| Pfam | 169 | 218 | 50 | 5.20E-19 | ||
| ProSiteProfiles | 170 | 204 | 35 | 12.814 | ||
| TIGRFAM | 172 | 205 | 34 | 9.40E-10 | ||
| SUPERFAMILY | 173 | 410 | 238 | 5.88E-08 | ||
| ProSiteProfiles | 205 | 239 | 35 | 11.871 | ||
| TIGRFAM | 207 | 240 | 34 | 2.90E-06 | ||
| ProSiteProfiles | 240 | 274 | 35 | 11.718 | ||
| Gene3D | 240 | 391 | 152 | 5.50E-07 | ||
| TIGRFAM | 243 | 276 | 34 | 1.10E-06 | ||
| Pfam | 243 | 272 | 30 | 8.40E-05 | ||
| Pfam | 274 | 322 | 49 | 2.60E-17 | ||
| ProSiteProfiles | 275 | 309 | 35 | 13.515 | ||
| TIGRFAM | 277 | 311 | 35 | 2.10E-10 | ||
| ProSiteProfiles | 310 | 344 | 35 | 10.797 | ||
| TIGRFAM | 312 | 345 | 34 | 5.10E-06 | ||
| ProSiteProfiles | 345 | 379 | 35 | 13.603 | ||
| Pfam | 345 | 392 | 48 | 6.30E-18 | ||
| TIGRFAM | 347 | 381 | 35 | 1.10E-09 | ||
| SUPERFAMILY | 356 | 587 | 232 | 1.01E-10 | – | |
| ProSiteProfiles | 380 | 414 | 35 | 11.038 | ||
| TIGRFAM | 382 | 412 | 31 | 2.60E-06 | ||
| Gene3D | 392 | 656 | 265 | 1.40E-11 | ||
| Pfam | 413 | 444 | 32 | 3.30E-10 | ||
| ProSiteProfiles | 417 | 451 | 35 | 11.444 | ||
| TIGRFAM | 419 | 452 | 34 | 2.30E-05 | ||
| ProSiteProfiles | 452 | 486 | 35 | 11.213 | ||
| Pfam | 452 | 500 | 49 | 7.90E-14 | ||
| TIGRFAM | 454 | 487 | 34 | 6.30E-05 | ||
| ProSiteProfiles | 487 | 521 | 35 | 10.731 | ||
| TIGRFAM | 490 | 522 | 33 | 1.60E-04 | ||
| ProSiteProfiles | 522 | 556 | 35 | 11.553 | ||
| Pfam | 522 | 567 | 46 | 8.10E-12 | ||
| TIGRFAM | 526 | 558 | 33 | 6.10E-08 | ||
| ProSiteProfiles | 557 | 591 | 35 | 10.578 | ||
| TIGRFAM | 560 | 593 | 34 | 1.70E-05 | ||
| Pfam | 591 | 638 | 48 | 2.00E-09 | ||
| ProSiteProfiles | 592 | 626 | 35 | 12.836 | ||
| TIGRFAM | 594 | 628 | 35 | 2.90E-09 | ||
| ProSiteProfiles | 627 | 661 | 35 | 8.649 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0109449.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0109449.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.