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Lj0g3v0122529.1

Overview

Field Value
Gene ID Lj0g3v0122529
Transcript ID Lj0g3v0122529.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 26S proteasome regulatory subunit 4 homolog A-like [Glycine max] gi|356505102|ref|XP_003521331.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 55 55 – –
PANTHER
PTHR23073
1 391 391 6.70E-249 –
TIGRFAM
TIGR01242
81 389 309 1.90E-122
IPR005937
MobiDBLite
mobidb-lite
90 110 21 – –
Gene3D
G3DSA:3.40.50.300
179 389 211 7.90E-69
IPR027417
SUPERFAMILY
SSF52540
189 389 201 7.47E-57
IPR027417
CDD
cd00009
194 361 168 1.31E-26 –
SMART
SM00382
224 363 140 3.60E-20
IPR003593
Pfam
PF00004
228 361 134 2.40E-40
IPR003959
ProSitePatterns
PS00674
331 349 19 –
IPR003960

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030163
Biological process Protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0122529.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0122529.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.