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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0162819 |
| Transcript ID | Lj0g3v0162819.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cicer arietinum] gi|502140202|ref|XP_004504106.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 12 | 12 | – | – | |
| Phobius | 13 | 20 | 8 | – | – | |
| Phobius | 21 | 24 | 4 | – | – | |
| Phobius | 25 | 721 | 697 | – | – | |
| PANTHER | 65 | 591 | 527 | 0 | – | |
| PANTHER | 65 | 591 | 527 | 0 | – | |
| SUPERFAMILY | 76 | 248 | 173 | 8.01E-05 | ||
| Gene3D | 82 | 132 | 51 | 3.60E-11 | ||
| ProSiteProfiles | 85 | 115 | 31 | 9.328 | ||
| Pfam | 89 | 115 | 27 | 0.0018 | ||
| ProSiteProfiles | 116 | 150 | 35 | 10.918 | ||
| Pfam | 119 | 146 | 28 | 8.00E-06 | ||
| TIGRFAM | 119 | 147 | 29 | 4.90E-06 | ||
| Pfam | 147 | 193 | 47 | 3.60E-08 | ||
| TIGRFAM | 149 | 181 | 33 | 6.60E-06 | ||
| ProSiteProfiles | 151 | 181 | 31 | 7.202 | ||
| Gene3D | 186 | 302 | 117 | 3.60E-11 | ||
| ProSiteProfiles | 217 | 247 | 31 | 10.041 | ||
| Pfam | 247 | 294 | 48 | 9.50E-14 | ||
| ProSiteProfiles | 248 | 282 | 35 | 13.482 | ||
| SUPERFAMILY | 248 | 356 | 109 | 1.14E-07 | ||
| TIGRFAM | 250 | 283 | 34 | 1.80E-09 | ||
| ProSiteProfiles | 283 | 313 | 31 | 9.558 | ||
| TIGRFAM | 286 | 313 | 28 | 7.20E-04 | ||
| Gene3D | 303 | 344 | 42 | 4.30E-07 | ||
| Pfam | 314 | 362 | 49 | 3.90E-10 | ||
| ProSiteProfiles | 314 | 348 | 35 | 11.279 | ||
| TIGRFAM | 316 | 350 | 35 | 7.00E-08 | ||
| ProSiteProfiles | 349 | 383 | 35 | 5.755 | ||
| ProSiteProfiles | 384 | 414 | 31 | 7.52 | ||
| SUPERFAMILY | 391 | 565 | 175 | 1.14E-07 | ||
| Gene3D | 412 | 445 | 34 | 4.30E-07 | ||
| ProSiteProfiles | 415 | 449 | 35 | 13.033 | ||
| Pfam | 415 | 461 | 47 | 9.10E-11 | ||
| TIGRFAM | 417 | 450 | 34 | 7.00E-08 | ||
| ProSiteProfiles | 450 | 484 | 35 | 8.342 | ||
| ProSiteProfiles | 485 | 515 | 31 | 6.971 | ||
| Pfam | 489 | 513 | 25 | 0.45 | ||
| Gene3D | 547 | 569 | 23 | 4.30E-07 | ||
| ProSiteProfiles | 550 | 584 | 35 | 5.634 | ||
| Pfam | 589 | 710 | 122 | 6.40E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0162819.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0162819.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.