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Lj0g3v0190569.1

Overview

Field Value
Gene ID Lj0g3v0190569
Transcript ID Lj0g3v0190569.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: lysyl-tRNA synthetase-like [Glycine max] gi|356533832|ref|XP_003535462.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22594
1 214 214 2.20E-284
IPR018150
MobiDBLite
mobidb-lite
1 66 66 – –
PANTHER
PTHR22594:SF35
1 214 214 2.20E-284 –
Coils
Coil
19 55 37 – –
SUPERFAMILY
SSF50249
65 209 145 3.67E-36
IPR012340
Gene3D
G3DSA:2.40.50.140
68 209 142 7.10E-43 –
CDD
cd04322
119 254 136 2.99E-45 –
Pfam
PF01336
120 197 78 8.50E-13
IPR004365
PANTHER
PTHR22594
235 485 251 2.20E-284
IPR018150
PANTHER
PTHR22594:SF35
235 485 251 2.20E-284 –
Gene3D
G3DSA:3.30.930.10
240 485 246 8.20E-75 –
SUPERFAMILY
SSF55681
242 485 244 8.36E-73 –
Pfam
PF00152
242 485 244 3.10E-49
IPR004364
ProSiteProfiles
PS50862
264 408 145 17.224
IPR006195
PRINTS
PR00982
279 289 11 2.20E-33
IPR018149
PRINTS
PR00982
295 311 17 2.20E-33
IPR018149
PRINTS
PR00982
324 337 14 2.20E-33
IPR018149
PRINTS
PR00982
342 359 18 2.20E-33
IPR018149
PRINTS
PR00982
477 485 9 2.20E-33
IPR018149

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004824
Molecular function Lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of
GO:0006430
Biological process Lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj0g3v0190569.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0190569.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.