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Lj0g3v0206689.2

Overview

Field Value
Gene ID Lj0g3v0206689
Transcript ID Lj0g3v0206689.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum] gi|502127604|ref|XP_004499769.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 11 300 290 0
PANTHER 11 300 290 0
MobiDBLite 20 73 54
Pfam 31 107 77 1.70E-10
MobiDBLite 95 133 39
Pfam 235 355 121 2.40E-12
SUPERFAMILY 267 647 381 3.66E-45
PANTHER 320 1539 1220 0
PANTHER 320 1539 1220 0
Gene3D 430 651 222 3.40E-31
SUPERFAMILY 662 819 158 3.79E-13
Pfam 667 819 153 1.00E-12
Gene3D 675 808 134 1.60E-06
Gene3D 809 861 53 3.40E-31
Pfam 823 925 103 2.20E-18
SUPERFAMILY 835 924 90 2.22E-06
Gene3D 873 1027 155 1.40E-16
SUPERFAMILY 937 1028 92 1.40E-06
Pfam 938 1045 108 7.80E-27
SUPERFAMILY 1049 1129 81 2.02E-08
Gene3D 1049 1125 77 1.10E-08
SMART 1051 1123 73 3.10E-08
ProSiteProfiles 1053 1123 71 10.752
Pfam 1153 1357 205 1.40E-61
SUPERFAMILY 1172 1263 92 1.87E-06
CDD 1174 1261 88 1.97E-24
CDD 1272 1358 87 2.87E-26
MobiDBLite 1367 1762 396

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Biological process Positive regulation of transcription elongation from RNA polymerase II promoter Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.

Expression data

Expression pattern

Expression pattern of Lj0g3v0206689.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0206689.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.