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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0210949 |
| Transcript ID | Lj0g3v0210949.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable ATP-dependent RNA helicase DHR1-like [Glycine max] gi|356506353|ref|XP_003521949.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 5.70E-275 | – | |
| PANTHER | 1 | 147 | 147 | 5.70E-275 | – | |
| Phobius | 1 | 556 | 556 | – | – | |
| Gene3D | 3 | 183 | 181 | 8.40E-47 | ||
| Pfam | 4 | 184 | 181 | 2.80E-09 | ||
| SMART | 4 | 211 | 208 | 3.20E-23 | ||
| SUPERFAMILY | 5 | 261 | 257 | 1.10E-70 | ||
| ProSiteProfiles | 7 | 199 | 193 | 19.99 | ||
| SMART | 12 | 174 | 163 | 0.0018 | ||
| CDD | 14 | 160 | 147 | 2.92E-24 | – | |
| ProSitePatterns | 118 | 127 | 10 | – | ||
| PANTHER | 171 | 259 | 89 | 5.70E-275 | – | |
| PANTHER | 171 | 259 | 89 | 5.70E-275 | – | |
| Gene3D | 210 | 260 | 51 | 1.90E-14 | ||
| MobiDBLite | 303 | 352 | 50 | – | – | |
| ProSiteProfiles | 371 | 553 | 183 | 14.209 | ||
| Pfam | 387 | 512 | 126 | 5.30E-10 | ||
| SMART | 410 | 512 | 103 | 4.30E-15 | ||
| PANTHER | 411 | 557 | 147 | 5.70E-275 | – | |
| PANTHER | 411 | 557 | 147 | 5.70E-275 | – | |
| SUPERFAMILY | 417 | 555 | 139 | 1.10E-70 | ||
| Gene3D | 422 | 522 | 101 | 1.90E-14 | ||
| CDD | 426 | 519 | 94 | 2.02E-07 | – | |
| Phobius | 557 | 576 | 20 | – | – | |
| TMHMM | 557 | 576 | 20 | – | – | |
| Phobius | 577 | 579 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj0g3v0210949.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0210949.1, powered by CORGI.
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