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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0258189 |
| Transcript ID | Lj0g3v0258189.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Cicer arietinum] gi|502123470|ref|XP_004498123.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 11 | 8 | – | – | |
| Phobius | 12 | 19 | 8 | – | – | |
| Phobius | 20 | 625 | 606 | – | – | |
| ProSiteProfiles | 44 | 78 | 35 | 9.438 | ||
| TIGRFAM | 48 | 76 | 29 | 4.40E-05 | ||
| PANTHER | 49 | 575 | 527 | 0 | – | |
| PANTHER | 49 | 575 | 527 | 0 | – | |
| Pfam | 52 | 75 | 24 | 0.001 | ||
| Gene3D | 56 | 248 | 193 | 1.50E-12 | ||
| Pfam | 79 | 100 | 22 | 0.02 | ||
| SUPERFAMILY | 102 | 270 | 169 | 2.33E-07 | ||
| ProSiteProfiles | 107 | 137 | 31 | 11.192 | ||
| TIGRFAM | 109 | 139 | 31 | 1.50E-07 | ||
| Pfam | 109 | 139 | 31 | 2.20E-08 | ||
| ProSiteProfiles | 138 | 172 | 35 | 13.219 | ||
| Pfam | 141 | 170 | 30 | 9.70E-11 | ||
| TIGRFAM | 141 | 171 | 31 | 3.30E-10 | ||
| ProSiteProfiles | 173 | 199 | 27 | 7.026 | ||
| Pfam | 199 | 227 | 29 | 4.70E-07 | ||
| ProSiteProfiles | 200 | 230 | 31 | 10.216 | ||
| TIGRFAM | 203 | 232 | 30 | 1.40E-06 | ||
| ProSiteProfiles | 231 | 265 | 35 | 13.471 | ||
| TIGRFAM | 233 | 263 | 31 | 2.90E-09 | ||
| Pfam | 233 | 262 | 30 | 1.80E-10 | ||
| SUPERFAMILY | 238 | 320 | 83 | 6.58E-09 | ||
| Gene3D | 249 | 459 | 211 | 2.20E-17 | ||
| TIGRFAM | 265 | 292 | 28 | 1.40E-05 | ||
| ProSiteProfiles | 266 | 292 | 27 | 7.322 | ||
| Pfam | 292 | 340 | 49 | 2.50E-10 | ||
| ProSiteProfiles | 293 | 328 | 36 | 9.975 | ||
| TIGRFAM | 295 | 323 | 29 | 2.20E-05 | ||
| ProSiteProfiles | 329 | 363 | 35 | 5.426 | ||
| ProSiteProfiles | 364 | 395 | 32 | 6.752 | ||
| Pfam | 368 | 390 | 23 | 0.15 | ||
| SUPERFAMILY | 393 | 464 | 72 | 6.58E-09 | ||
| ProSiteProfiles | 397 | 431 | 35 | 11.203 | ||
| Pfam | 397 | 443 | 47 | 2.80E-10 | ||
| TIGRFAM | 399 | 432 | 34 | 1.90E-06 | ||
| ProSiteProfiles | 432 | 462 | 31 | 8.309 | ||
| ProSiteProfiles | 468 | 498 | 31 | 5.963 | ||
| Pfam | 472 | 493 | 22 | 1.1 | ||
| SUPERFAMILY | 511 | 571 | 61 | 6.58E-09 | ||
| Gene3D | 528 | 555 | 28 | 2.20E-17 | ||
| ProSiteProfiles | 534 | 568 | 35 | 9.745 | ||
| Pfam | 537 | 566 | 30 | 0.014 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0258189.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0258189.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.