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Lj0g3v0266619.1

Overview

Field	Value
Gene ID	Lj0g3v0266619
Transcript ID	Lj0g3v0266619.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi\|356573855\|ref\|XP_003555071.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	25	25	–	–
ProSiteProfiles	PS51667 View details on PS51667 Search for proteins/transripts with this domain View external data on PS51667	13	57	45	17.338	IPR014977 Show description in modal box View details on IPR014977 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08879 View details on PF08879 Search for proteins/transripts with this domain View external data on PF08879	14	53	40	6.50E-13	IPR014977 Show description in modal box View details on IPR014977 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	51	117	67	–	–
PANTHER	PTHR12549 View details on PTHR12549 Search for proteins/transripts with this domain View external data on PTHR12549	74	809	736	0	–
PANTHER	PTHR12549:SF16 View details on PTHR12549:SF16 Search for proteins/transripts with this domain View external data on PTHR12549:SF16	74	809	736	0	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	132	152	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	148	186	39	–	–
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	188	234	47	9.288	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF51197 View details on SSF51197 Search for proteins/transripts with this domain View external data on SSF51197	479	656	178	1.83E-24	–
SMART	SM00558 View details on SM00558 Search for proteins/transripts with this domain View external data on SM00558	581	809	229	1.20E-38	IPR003347 Show description in modal box View details on IPR003347 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51184 View details on PS51184 Search for proteins/transripts with this domain View external data on PS51184	600	809	210	21.835	IPR003347 Show description in modal box View details on IPR003347 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF51197 View details on SSF51197 Search for proteins/transripts with this domain View external data on SSF51197	725	809	85	1.83E-24	–
Pfam	PF02373 View details on PF02373 Search for proteins/transripts with this domain View external data on PF02373	726	809	84	2.50E-07	IPR003347 Show description in modal box View details on IPR003347 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 33

Expression data

Expression pattern

Expression pattern of Lj0g3v0266619.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0266619.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.