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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0267139 |
| Transcript ID | Lj0g3v0267139.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | – | – | |
| ProSiteProfiles | 19 | 55 | 37 | 5.601 | ||
| PANTHER | 38 | 452 | 415 | 1.50E-301 | – | |
| PANTHER | 38 | 452 | 415 | 1.50E-301 | – | |
| Pfam | 43 | 101 | 59 | 5.30E-16 | ||
| ProSiteProfiles | 56 | 90 | 35 | 12.88 | ||
| TIGRFAM | 58 | 92 | 35 | 2.70E-09 | ||
| ProSiteProfiles | 91 | 125 | 35 | 12.562 | ||
| TIGRFAM | 93 | 126 | 34 | 2.30E-07 | ||
| Pfam | 125 | 174 | 50 | 1.30E-17 | ||
| ProSiteProfiles | 126 | 160 | 35 | 13.077 | ||
| Gene3D | 128 | 178 | 51 | 2.20E-05 | ||
| TIGRFAM | 129 | 162 | 34 | 1.70E-08 | ||
| SUPERFAMILY | 160 | 300 | 141 | 1.05E-05 | ||
| ProSiteProfiles | 161 | 195 | 35 | 12.978 | ||
| TIGRFAM | 163 | 197 | 35 | 1.90E-09 | ||
| Pfam | 195 | 244 | 50 | 3.20E-18 | ||
| ProSiteProfiles | 196 | 230 | 35 | 12.233 | ||
| TIGRFAM | 198 | 232 | 35 | 5.30E-09 | ||
| ProSiteProfiles | 231 | 265 | 35 | 13.143 | ||
| Gene3D | 234 | 296 | 63 | 2.20E-05 | ||
| TIGRFAM | 234 | 267 | 34 | 7.00E-10 | ||
| Pfam | 261 | 294 | 34 | 1.90E-10 | ||
| ProSiteProfiles | 266 | 300 | 35 | 13.033 | ||
| TIGRFAM | 268 | 302 | 35 | 1.10E-08 | ||
| Pfam | 300 | 349 | 50 | 1.00E-17 | ||
| ProSiteProfiles | 301 | 335 | 35 | 12.31 | ||
| TIGRFAM | 303 | 337 | 35 | 3.40E-09 | ||
| Gene3D | 334 | 404 | 71 | 2.20E-05 | ||
| SUPERFAMILY | 335 | 400 | 66 | 1.05E-05 | ||
| ProSiteProfiles | 336 | 370 | 35 | 13.778 | ||
| TIGRFAM | 338 | 372 | 35 | 3.20E-09 | ||
| Pfam | 370 | 418 | 49 | 2.20E-16 | ||
| ProSiteProfiles | 371 | 405 | 35 | 13.888 | ||
| TIGRFAM | 373 | 407 | 35 | 4.90E-10 | ||
| ProSiteProfiles | 406 | 440 | 35 | 8.649 | ||
| ProSiteProfiles | 456 | 490 | 35 | 8.495 | ||
| Pfam | 463 | 486 | 24 | 0.17 | ||
| PANTHER | 468 | 602 | 135 | 1.50E-301 | – | |
| PANTHER | 468 | 602 | 135 | 1.50E-301 | – | |
| ProSiteProfiles | 491 | 525 | 35 | 11.477 | ||
| Pfam | 494 | 538 | 45 | 3.00E-08 | ||
| TIGRFAM | 494 | 524 | 31 | 6.30E-07 | ||
| ProSiteProfiles | 561 | 595 | 35 | 7.574 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0267139.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0267139.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.