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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0290279 |
| Transcript ID | Lj0g3v0290279.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: zinc finger CCCH domain-containing protein 5-like [Glycine max] gi|356528629|ref|XP_003532902.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| Phobius | 15 | 20 | 6 | – | – | |
| Phobius | 21 | 222 | 202 | – | – | |
| PANTHER | 23 | 182 | 160 | 1.10E-48 | – | |
| PANTHER | 23 | 182 | 160 | 1.10E-48 | ||
| ProSiteProfiles | 33 | 63 | 31 | 10.465 | ||
| SMART | 33 | 62 | 30 | 3.40E-04 | ||
| Pfam | 34 | 61 | 28 | 3.50E-07 | ||
| MobiDBLite | 107 | 222 | 116 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Cellular component | U2AF | A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point. |
Expression pattern of Lj0g3v0290279.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0290279.2, powered by CORGI.
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