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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009145
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We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.362s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004639.1
n.a. Zinc finger C-x8-C-x5-C-x3-H type family protein [Theobroma cacao] gi|508786323|gb|EOY33579.1| chr0 1698356 1701799 -
3 domain predictions
3 GO terms
Lj0g3v0180079.1
n.a. splicing factor U2af subunit isoform 1 [Zea mays] gi|413948479|gb|AFW81128.1| chr0 87541633 87542504 +
3 domain predictions
3 GO terms
Lj0g3v0290279.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 5-like [Glycine max] gi|356528629|ref|XP_003532902.1| chr0 150722215 150725509 +
3 domain predictions
3 GO terms
Lj0g3v0290279.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 5-like [Glycine max] gi|356528629|ref|XP_003532902.1| chr0 150723221 150725509 +
2 domain predictions
3 GO terms
Lj0g3v0290329.1
n.a. zinc finger CCCH domain-containing protein 5 [Arabidopsis thaliana] gi|15218489|ref|NP_172503.1| chr0 150742922 150749345 -
3 domain predictions
3 GO terms
Lj0g3v0290329.2
n.a. U2 auxiliary factor small subunit [Medicago truncatula] gi|140053487|gb|ABO80462.1| chr0 150742922 150749345 -
3 domain predictions
3 GO terms
Lj0g3v0290329.3
n.a. zinc finger CCCH domain-containing protein 5 [Arabidopsis thaliana] gi|15218489|ref|NP_172503.1| chr0 150742922 150749345 -
3 domain predictions
3 GO terms
Lj0g3v0290349.1
n.a. zinc finger CCCH domain-containing protein 5 [Arabidopsis thaliana] gi|15218489|ref|NP_172503.1| chr0 150745465 150748700 -
2 domain predictions
3 GO terms
Lj1g3v4694450.1
n.a. PREDICTED: splicing factor U2af small subunit B-like [Glycine max] gi|356505320|ref|XP_003521439.1| chr1 55915763 55919043 +
3 domain predictions
3 GO terms
Lj3g3v1132330.3
n.a. Zinc finger C-x8-C-x5-C-x3-H type family protein [Theobroma cacao] gi|508786323|gb|EOY33579.1| chr3 15283058 15285550 +
2 domain predictions
3 GO terms
Lj3g3v3006550.1
n.a. Zinc finger C-x8-C-x5-C-x3-H type family protein [Theobroma cacao] gi|508786323|gb|EOY33579.1| chr3 37650635 37652358 -
3 domain predictions
3 GO terms
LotjaGi1g1v0680100.1
n.a. Splicing factor U2af small subunit A-like protein; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|I3SLP5|I3SLP5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680100 LjG1.1_chr1 124742313 124745758 -
3 domain predictions
3 GO terms
LotjaGi2g1v0011500.1
n.a. Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|A0A1D1Z0R2|A0A1D1Z0R2_9ARAE Splicing factor U2af small subunit A; Found in the gene: LotjaGi2g1v0011500 LjG1.1_chr2 4257793 4265450 -
3 domain predictions
3 GO terms
LotjaGi2g1v0011500.2
n.a. Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B; TrEMBL-Plants: tr|A0A1D1Z0R2|A0A1D1Z0R2_9ARAE Splicing factor U2af small subunit A; Found in the gene: LotjaGi2g1v0011500 LjG1.1_chr2 4264301 4265202 -
3 domain predictions
3 GO terms
LotjaGi3g1v0172600.1
n.a. Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A; TrEMBL-Plants: tr|A0A1J7IB44|A0A1J7IB44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172600 LjG1.1_chr3 23862197 23866228 +
3 domain predictions
3 GO terms
LotjaGi3g1v0481000.1
n.a. Splicing factor U2af small subunit A; TAIR: AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A; TrEMBL-Plants: tr|A0A1J7IB44|A0A1J7IB44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481000 LjG1.1_chr3 89836830 89840908 -
3 domain predictions
3 GO terms
LotjaGi5g1v0035100.1
n.a. Zinc finger CCCH domain protein, putative; TAIR: AT1G10320.2 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5; TrEMBL-Plants: tr|A0A178W6J5|A0A178W6J5_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0035100 LjG1.1_chr5 5783113 5798919 +
3 domain predictions
3 GO terms
LotjaGi5g1v0035100.2
n.a. Zinc finger CCCH domain protein, putative; TAIR: AT1G10320.2 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5; TrEMBL-Plants: tr|A0A178W6J5|A0A178W6J5_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0035100 LjG1.1_chr5 5783113 5800934 +
3 domain predictions
3 GO terms
LotjaGi5g1v0035100.3
n.a. Zinc finger CCCH domain protein, putative; TAIR: AT1G10320.2 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5; TrEMBL-Plants: tr|A0A178W6J5|A0A178W6J5_ARATH Uncharacterized protein; Found in the gene: LotjaGi5g1v0035100 LjG1.1_chr5 5783323 5798582 +
3 domain predictions
3 GO terms