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Lj0g3v0291009.1

Overview

Field Value
Gene ID Lj0g3v0291009
Transcript ID Lj0g3v0291009.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like isoform X1 [Cicer arietinum] gi|502136340|ref|XP_004502651.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11262
2 302 301 2.00E-243 –
PANTHER
PTHR11262:SF11
2 302 301 2.00E-243 –
TIGRFAM
TIGR00382
13 302 290 1.20E-118
IPR004487
SUPERFAMILY
SSF52540
13 48 36 1.69E-49
IPR027417
Gene3D
G3DSA:3.40.50.300
15 226 212 2.40E-57
IPR027417
SUPERFAMILY
SSF52540
80 302 223 1.69E-49
IPR027417
SMART
SM00382
83 241 159 9.00E-10
IPR003593
Pfam
PF07724
83 287 205 4.30E-46
IPR003959
CDD
cd00009
84 167 84 2.08E-14 –
Gene3D
G3DSA:3.40.50.300
277 301 25 2.40E-57
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 31

Expression data

Expression pattern

Expression pattern of Lj0g3v0291009.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0291009.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.