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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0297589 |
| Transcript ID | Lj0g3v0297589.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 12 | 12 | 5.108 | ||
| PANTHER | 1 | 176 | 176 | 7.80E-126 | – | |
| Phobius | 1 | 523 | 523 | – | – | |
| PANTHER | 1 | 176 | 176 | 7.80E-126 | – | |
| Pfam | 2 | 59 | 58 | 9.20E-10 | ||
| ProSiteProfiles | 13 | 47 | 35 | 10.468 | ||
| ProSiteProfiles | 48 | 84 | 37 | 10.994 | ||
| TIGRFAM | 51 | 86 | 36 | 0.0024 | ||
| Pfam | 84 | 134 | 51 | 9.20E-16 | ||
| ProSiteProfiles | 85 | 120 | 36 | 10.961 | ||
| TIGRFAM | 87 | 122 | 36 | 6.10E-05 | ||
| Gene3D | 121 | 176 | 56 | 2.80E-04 | ||
| ProSiteProfiles | 121 | 155 | 35 | 13.165 | ||
| TIGRFAM | 124 | 156 | 33 | 2.00E-09 | ||
| ProSiteProfiles | 156 | 190 | 35 | 10.183 | ||
| TIGRFAM | 158 | 191 | 34 | 4.00E-05 | ||
| Pfam | 159 | 188 | 30 | 0.0034 | ||
| Pfam | 195 | 226 | 32 | 1.50E-08 | ||
| PANTHER | 198 | 366 | 169 | 7.80E-126 | – | |
| PANTHER | 198 | 366 | 169 | 7.80E-126 | – | |
| ProSiteProfiles | 199 | 233 | 35 | 12.66 | ||
| TIGRFAM | 201 | 235 | 35 | 3.00E-09 | ||
| Pfam | 230 | 262 | 33 | 1.10E-09 | ||
| ProSiteProfiles | 234 | 268 | 35 | 10.446 | ||
| TIGRFAM | 238 | 266 | 29 | 1.10E-05 | ||
| Gene3D | 271 | 464 | 194 | 2.80E-04 | ||
| ProSiteProfiles | 283 | 317 | 35 | 10.052 | ||
| Pfam | 286 | 306 | 21 | 0.5 | ||
| ProSiteProfiles | 318 | 352 | 35 | 5.568 | ||
| ProSiteProfiles | 370 | 404 | 35 | 7.278 | ||
| PANTHER | 382 | 516 | 135 | 7.80E-126 | – | |
| PANTHER | 382 | 516 | 135 | 7.80E-126 | – | |
| ProSiteProfiles | 405 | 439 | 35 | 10.172 | ||
| TIGRFAM | 408 | 439 | 32 | 4.50E-04 | ||
| Pfam | 408 | 437 | 30 | 5.90E-04 | ||
| Phobius | 524 | 541 | 18 | – | – | |
| Phobius | 542 | 546 | 5 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0297589.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0297589.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.