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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0298949 |
| Transcript ID | Lj0g3v0298949.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max] gi|356501519|ref|XP_003519572.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 46 | 37 | 0 | – | |
| PANTHER | 10 | 46 | 37 | 0 | – | |
| MobiDBLite | 27 | 49 | 23 | – | – | |
| Gene3D | 64 | 277 | 214 | 1.50E-70 | ||
| ProSiteProfiles | 66 | 94 | 29 | 9.194 | ||
| PANTHER | 67 | 536 | 470 | 0 | – | |
| PANTHER | 67 | 536 | 470 | 0 | – | |
| CDD | 68 | 273 | 206 | 1.68E-80 | – | |
| SMART | 85 | 289 | 205 | 9.90E-53 | ||
| Pfam | 90 | 260 | 171 | 2.30E-44 | ||
| ProSiteProfiles | 97 | 272 | 176 | 30.509 | ||
| SUPERFAMILY | 138 | 428 | 291 | 2.27E-60 | ||
| ProSitePatterns | 218 | 226 | 9 | – | ||
| Gene3D | 278 | 430 | 153 | 4.70E-39 | ||
| CDD | 286 | 416 | 131 | 5.68E-27 | – | |
| ProSiteProfiles | 294 | 446 | 153 | 17.639 | ||
| Pfam | 298 | 407 | 110 | 3.80E-23 | ||
| SMART | 325 | 408 | 84 | 6.00E-23 | ||
| SMART | 447 | 510 | 64 | 8.70E-19 | ||
| Pfam | 452 | 508 | 57 | 2.60E-13 | ||
| PANTHER | 621 | 726 | 106 | 0 | – | |
| PANTHER | 621 | 726 | 106 | 0 | – | |
| MobiDBLite | 648 | 706 | 59 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj0g3v0298949.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0298949.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.