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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0300999 |
| Transcript ID | Lj0g3v0300999.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: probable RNA 3'-terminal phosphate cyclase-like protein-like [Glycine max] gi|356496398|ref|XP_003517055.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | – | – | |
| Phobius | 1 | 36 | 36 | – | – | |
| CDD | 6 | 355 | 350 | 7.38E-147 | ||
| PANTHER | 8 | 379 | 372 | 3.50E-187 | ||
| PANTHER | 8 | 379 | 372 | 3.50E-187 | – | |
| TIGRFAM | 8 | 378 | 371 | 3.20E-135 | ||
| Pfam | 9 | 351 | 343 | 5.00E-56 | ||
| Gene3D | 10 | 178 | 169 | 6.20E-66 | ||
| SUPERFAMILY | 11 | 235 | 225 | 3.92E-57 | ||
| Phobius | 19 | 31 | 13 | – | – | |
| Phobius | 32 | 36 | 5 | – | – | |
| Phobius | 37 | 379 | 343 | – | – | |
| ProSitePatterns | 158 | 168 | 11 | – | ||
| Pfam | 184 | 299 | 116 | 6.30E-31 | ||
| ProDom | 194 | 259 | 66 | 7.00E-22 | – | |
| Gene3D | 297 | 359 | 63 | 6.20E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of Lj0g3v0300999.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0300999.2, powered by CORGI.
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