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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0306379 |
| Transcript ID | Lj0g3v0306379.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 5-like [Glycine max] gi|356545904|ref|XP_003541373.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | – | – | |
| Phobius | 40 | 62 | 23 | – | – | |
| TMHMM | 40 | 62 | 23 | – | – | |
| PANTHER | 45 | 1440 | 1396 | 0 | – | |
| PANTHER | 45 | 1440 | 1396 | 0 | – | |
| Phobius | 63 | 73 | 11 | – | – | |
| TMHMM | 74 | 96 | 23 | – | – | |
| Phobius | 74 | 93 | 20 | – | – | |
| Phobius | 94 | 112 | 19 | – | – | |
| TMHMM | 111 | 133 | 23 | – | – | |
| Phobius | 113 | 132 | 20 | – | – | |
| Phobius | 133 | 236 | 104 | – | – | |
| SUPERFAMILY | 227 | 534 | 308 | 1.57E-39 | ||
| Gene3D | 227 | 537 | 311 | 6.80E-31 | – | |
| Phobius | 237 | 258 | 22 | – | – | |
| ProSiteProfiles | 238 | 518 | 281 | 36.457 | ||
| TMHMM | 239 | 261 | 23 | – | – | |
| Pfam | 241 | 506 | 266 | 5.10E-27 | ||
| Phobius | 259 | 295 | 37 | – | – | |
| TMHMM | 276 | 298 | 23 | – | – | |
| Phobius | 296 | 316 | 21 | – | – | |
| Phobius | 317 | 348 | 32 | – | – | |
| Phobius | 349 | 368 | 20 | – | – | |
| TMHMM | 349 | 371 | 23 | – | – | |
| Phobius | 369 | 373 | 5 | – | – | |
| Phobius | 374 | 396 | 23 | – | – | |
| TMHMM | 376 | 398 | 23 | – | – | |
| Phobius | 397 | 453 | 57 | – | – | |
| Coils | 399 | 419 | 21 | – | – | |
| Phobius | 454 | 475 | 22 | – | – | |
| TMHMM | 463 | 485 | 23 | – | – | |
| Phobius | 476 | 480 | 5 | – | – | |
| Phobius | 481 | 502 | 22 | – | – | |
| Phobius | 503 | 873 | 371 | – | – | |
| SUPERFAMILY | 549 | 774 | 226 | 6.25E-55 | ||
| ProSiteProfiles | 552 | 775 | 224 | 23.309 | ||
| CDD | 552 | 752 | 201 | 4.93E-104 | – | |
| Gene3D | 556 | 782 | 227 | 9.50E-65 | ||
| Pfam | 570 | 704 | 135 | 6.70E-18 | ||
| SMART | 579 | 760 | 182 | 2.20E-15 | ||
| ProSitePatterns | 677 | 691 | 15 | – | ||
| MobiDBLite | 784 | 803 | 20 | – | – | |
| Gene3D | 869 | 1173 | 305 | 7.80E-57 | – | |
| Phobius | 874 | 897 | 24 | – | – | |
| TMHMM | 874 | 896 | 23 | – | – | |
| SUPERFAMILY | 875 | 1177 | 303 | 3.92E-51 | ||
| Pfam | 878 | 1130 | 253 | 4.90E-28 | ||
| ProSiteProfiles | 878 | 1148 | 271 | 36.969 | ||
| Phobius | 898 | 916 | 19 | – | – | |
| TMHMM | 916 | 938 | 23 | – | – | |
| Phobius | 917 | 946 | 30 | – | – | |
| Phobius | 947 | 991 | 45 | – | – | |
| Phobius | 992 | 1010 | 19 | – | – | |
| Phobius | 1011 | 1015 | 5 | – | – | |
| TMHMM | 1012 | 1029 | 18 | – | – | |
| Phobius | 1016 | 1034 | 19 | – | – | |
| Phobius | 1035 | 1079 | 45 | – | – | |
| TMHMM | 1080 | 1102 | 23 | – | – | |
| Phobius | 1080 | 1100 | 21 | – | – | |
| Phobius | 1101 | 1105 | 5 | – | – | |
| Phobius | 1106 | 1122 | 17 | – | – | |
| Phobius | 1123 | 1441 | 319 | – | – | |
| SUPERFAMILY | 1186 | 1420 | 235 | 3.92E-68 | ||
| CDD | 1193 | 1413 | 221 | 1.39E-127 | – | |
| Gene3D | 1194 | 1421 | 228 | 1.40E-64 | ||
| ProSiteProfiles | 1195 | 1429 | 235 | 18.047 | ||
| Pfam | 1212 | 1360 | 149 | 6.20E-32 | ||
| SMART | 1221 | 1406 | 186 | 2.50E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0306379.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0306379.1, powered by CORGI.
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