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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0306379 |
| Transcript ID | Lj0g3v0306379.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 5-like [Glycine max] gi|356545904|ref|XP_003541373.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | – | – | |
| Phobius | 40 | 62 | 23 | – | – | |
| TMHMM | 40 | 62 | 23 | – | – | |
| PANTHER | 45 | 746 | 702 | 0 | – | |
| PANTHER | 45 | 746 | 702 | 0 | – | |
| Phobius | 63 | 73 | 11 | – | – | |
| Phobius | 74 | 93 | 20 | – | – | |
| TMHMM | 74 | 96 | 23 | – | – | |
| Phobius | 94 | 112 | 19 | – | – | |
| TMHMM | 111 | 133 | 23 | – | – | |
| Phobius | 113 | 132 | 20 | – | – | |
| Phobius | 133 | 236 | 104 | – | – | |
| Gene3D | 227 | 537 | 311 | 2.10E-31 | – | |
| SUPERFAMILY | 227 | 537 | 311 | 2.09E-40 | ||
| Phobius | 237 | 258 | 22 | – | – | |
| ProSiteProfiles | 238 | 518 | 281 | 36.457 | ||
| TMHMM | 239 | 261 | 23 | – | – | |
| Pfam | 241 | 506 | 266 | 1.60E-27 | ||
| Phobius | 259 | 295 | 37 | – | – | |
| TMHMM | 276 | 298 | 23 | – | – | |
| Phobius | 296 | 316 | 21 | – | – | |
| Phobius | 317 | 348 | 32 | – | – | |
| Phobius | 349 | 368 | 20 | – | – | |
| TMHMM | 349 | 371 | 23 | – | – | |
| Phobius | 369 | 373 | 5 | – | – | |
| Phobius | 374 | 396 | 23 | – | – | |
| TMHMM | 376 | 398 | 23 | – | – | |
| Phobius | 397 | 453 | 57 | – | – | |
| Coils | 399 | 419 | 21 | – | – | |
| Phobius | 454 | 475 | 22 | – | – | |
| TMHMM | 463 | 485 | 23 | – | – | |
| Phobius | 476 | 480 | 5 | – | – | |
| Phobius | 481 | 502 | 22 | – | – | |
| Phobius | 503 | 753 | 251 | – | – | |
| SUPERFAMILY | 549 | 746 | 198 | 3.70E-47 | ||
| ProSiteProfiles | 552 | 753 | 202 | 17.227 | ||
| CDD | 552 | 746 | 195 | 1.33E-105 | – | |
| Gene3D | 556 | 746 | 191 | 3.70E-56 | ||
| Pfam | 570 | 704 | 135 | 2.70E-18 | ||
| SMART | 579 | 752 | 174 | 1.00E-13 | ||
| ProSitePatterns | 677 | 691 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0306379.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0306379.2, powered by CORGI.
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