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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0316999 |
| Transcript ID | Lj0g3v0316999.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g16860-like [Glycine max] gi|356552027|ref|XP_003544373.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 22 | 22 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| SignalP | 1 | 31 | 31 | – | – | |
| Phobius | 1 | 31 | 31 | – | – | |
| Phobius | 1 | 13 | 13 | – | – | |
| PANTHER | 3 | 337 | 335 | 0 | – | |
| PANTHER | 3 | 337 | 335 | 0 | – | |
| Phobius | 14 | 24 | 11 | – | – | |
| Phobius | 25 | 31 | 7 | – | – | |
| Phobius | 32 | 857 | 826 | – | – | |
| Gene3D | 95 | 333 | 239 | 1.60E-11 | ||
| ProSiteProfiles | 96 | 130 | 35 | 6.478 | ||
| ProSiteProfiles | 131 | 165 | 35 | 5.974 | ||
| ProSiteProfiles | 166 | 196 | 31 | 8.079 | ||
| Pfam | 169 | 198 | 30 | 0.046 | ||
| SUPERFAMILY | 175 | 240 | 66 | 1.17E-08 | ||
| Pfam | 200 | 247 | 48 | 1.10E-07 | ||
| ProSiteProfiles | 200 | 235 | 36 | 10.117 | ||
| TIGRFAM | 202 | 237 | 36 | 4.40E-06 | ||
| ProSiteProfiles | 271 | 301 | 31 | 9.602 | ||
| Pfam | 276 | 301 | 26 | 4.30E-05 | ||
| TIGRFAM | 276 | 303 | 28 | 1.80E-04 | ||
| SUPERFAMILY | 278 | 374 | 97 | 1.17E-08 | ||
| ProSiteProfiles | 302 | 336 | 35 | 13.45 | ||
| Pfam | 304 | 334 | 31 | 2.30E-09 | ||
| TIGRFAM | 304 | 338 | 35 | 2.00E-09 | ||
| Pfam | 337 | 384 | 48 | 1.70E-11 | ||
| ProSiteProfiles | 337 | 371 | 35 | 11.685 | ||
| TIGRFAM | 339 | 373 | 35 | 7.10E-06 | ||
| ProSiteProfiles | 372 | 402 | 31 | 5.042 | ||
| ProSiteProfiles | 413 | 443 | 31 | 5.722 | ||
| PANTHER | 414 | 728 | 315 | 0 | – | |
| PANTHER | 414 | 728 | 315 | 0 | – | |
| Pfam | 418 | 438 | 21 | 1.1 | ||
| Pfam | 446 | 495 | 50 | 1.50E-10 | ||
| ProSiteProfiles | 446 | 480 | 35 | 11.104 | ||
| TIGRFAM | 448 | 477 | 30 | 1.10E-04 | ||
| Gene3D | 517 | 578 | 62 | 1.60E-11 | ||
| ProSiteProfiles | 519 | 549 | 31 | 8.188 | ||
| TIGRFAM | 524 | 550 | 27 | 1.10E-05 | ||
| Pfam | 550 | 597 | 48 | 1.60E-09 | ||
| ProSiteProfiles | 550 | 584 | 35 | 12.003 | ||
| TIGRFAM | 552 | 585 | 34 | 2.60E-08 | ||
| SUPERFAMILY | 554 | 577 | 24 | 1.17E-08 | ||
| ProSiteProfiles | 585 | 620 | 36 | 8.232 | ||
| ProSiteProfiles | 621 | 655 | 35 | 8.429 | ||
| Pfam | 625 | 649 | 25 | 0.0024 | ||
| TIGRFAM | 625 | 648 | 24 | 5.30E-04 | ||
| ProSiteProfiles | 687 | 721 | 35 | 7.443 | ||
| Pfam | 723 | 847 | 125 | 1.50E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0316999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0316999.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.