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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0317109 |
| Transcript ID | Lj0g3v0317109.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 10-like [Glycine max] gi|356561462|ref|XP_003549000.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | – | – | |
| PANTHER | 19 | 1363 | 1345 | 0 | – | |
| PANTHER | 19 | 1363 | 1345 | 0 | – | |
| TMHMM | 36 | 58 | 23 | – | – | |
| Phobius | 37 | 58 | 22 | – | – | |
| Phobius | 59 | 77 | 19 | – | – | |
| Phobius | 78 | 101 | 24 | – | – | |
| TMHMM | 79 | 101 | 23 | – | – | |
| Phobius | 102 | 112 | 11 | – | – | |
| Phobius | 113 | 132 | 20 | – | – | |
| TMHMM | 116 | 133 | 18 | – | – | |
| Phobius | 133 | 143 | 11 | – | – | |
| Phobius | 144 | 169 | 26 | – | – | |
| TMHMM | 146 | 168 | 23 | – | – | |
| Phobius | 170 | 174 | 5 | – | – | |
| Phobius | 175 | 196 | 22 | – | – | |
| TMHMM | 178 | 196 | 19 | – | – | |
| Phobius | 197 | 309 | 113 | – | – | |
| SUPERFAMILY | 295 | 607 | 313 | 1.83E-26 | ||
| Gene3D | 299 | 607 | 309 | 5.70E-21 | – | |
| Phobius | 310 | 336 | 27 | – | – | |
| Pfam | 311 | 576 | 266 | 5.20E-20 | ||
| ProSiteProfiles | 311 | 591 | 281 | 27.255 | ||
| TMHMM | 315 | 337 | 23 | – | – | |
| Phobius | 337 | 347 | 11 | – | – | |
| Phobius | 348 | 365 | 18 | – | – | |
| Phobius | 366 | 435 | 70 | – | – | |
| TMHMM | 422 | 444 | 23 | – | – | |
| Phobius | 436 | 464 | 29 | – | – | |
| TMHMM | 446 | 468 | 23 | – | – | |
| Phobius | 465 | 535 | 71 | – | – | |
| Phobius | 536 | 556 | 21 | – | – | |
| TMHMM | 536 | 558 | 23 | – | – | |
| Phobius | 557 | 917 | 361 | – | – | |
| SUPERFAMILY | 620 | 849 | 230 | 1.54E-54 | ||
| CDD | 626 | 826 | 201 | 3.25E-101 | – | |
| ProSiteProfiles | 628 | 849 | 222 | 22.356 | ||
| Gene3D | 629 | 854 | 226 | 2.60E-64 | ||
| Pfam | 644 | 778 | 135 | 5.30E-24 | ||
| SMART | 653 | 826 | 174 | 5.60E-16 | ||
| ProSitePatterns | 751 | 765 | 15 | – | ||
| SUPERFAMILY | 905 | 1215 | 311 | 4.84E-45 | ||
| TMHMM | 917 | 939 | 23 | – | – | |
| Phobius | 918 | 938 | 21 | – | – | |
| ProSiteProfiles | 923 | 1198 | 276 | 26.711 | ||
| Gene3D | 923 | 1213 | 291 | 2.40E-51 | – | |
| Pfam | 925 | 1178 | 254 | 6.70E-25 | ||
| Phobius | 939 | 957 | 19 | – | – | |
| TMHMM | 949 | 971 | 23 | – | – | |
| Phobius | 958 | 983 | 26 | – | – | |
| TMHMM | 976 | 998 | 23 | – | – | |
| Phobius | 984 | 1045 | 62 | – | – | |
| Phobius | 1046 | 1068 | 23 | – | – | |
| TMHMM | 1046 | 1068 | 23 | – | – | |
| Phobius | 1069 | 1146 | 78 | – | – | |
| Phobius | 1147 | 1176 | 30 | – | – | |
| TMHMM | 1150 | 1172 | 23 | – | – | |
| Phobius | 1177 | 1363 | 187 | – | – | |
| SUPERFAMILY | 1224 | 1356 | 133 | 2.18E-30 | ||
| Gene3D | 1234 | 1348 | 115 | 1.60E-29 | ||
| Pfam | 1252 | 1352 | 101 | 1.30E-17 | ||
| SMART | 1261 | 1347 | 87 | 1.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0317109.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0317109.1, powered by CORGI.
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