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Lj0g3v0321629.1

Overview

Field Value
Gene ID Lj0g3v0321629
Transcript ID Lj0g3v0321629.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: vesicle-associated membrane protein 725-like [Glycine max] gi|356567876|ref|XP_003552141.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21136:SF95
1 219 219 4.10E-140 –
Phobius
CYTOPLASMIC_DOMAIN
1 195 195 – –
PANTHER
PTHR21136
1 219 219 4.10E-140 –
Gene3D
G3DSA:3.30.450.50
4 109 106 3.20E-42
IPR010908
SUPERFAMILY
SSF64356
6 121 116 6.71E-27
IPR011012
ProSiteProfiles
PS50859
10 114 105 27.142
IPR010908
SMART
SM01270
31 113 83 1.70E-24
IPR010908
Pfam
PF13774
34 111 78 1.30E-20
IPR010908
Gene3D
G3DSA:1.10.3840.10
110 214 105 1.60E-41
IPR001388
SUPERFAMILY
SSF58038
125 192 68 1.10E-19 –
CDD
cd15843
130 188 59 2.98E-21 –
Pfam
PF00957
130 214 85 1.20E-29
IPR001388
ProSiteProfiles
PS50892
130 190 61 15.927
IPR001388
PRINTS
PR00219
135 154 20 1.10E-14
IPR001388
PRINTS
PR00219
155 174 20 1.10E-14
IPR001388
PRINTS
PR00219
191 210 20 1.10E-14
IPR001388
Phobius
TRANSMEMBRANE
196 218 23 – –
TMHMM
TMhelix
196 218 23 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
219 221 3 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0321629.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0321629.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.