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Lj0g3v0324039.2

Overview

Field Value
Gene ID Lj0g3v0324039
Transcript ID Lj0g3v0324039.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 33 33 – –
PANTHER
PTHR21717
137 657 521 6.70E-87 –
PANTHER
PTHR21717:SF18
137 657 521 6.70E-87 –
SUPERFAMILY
SSF57903
300 354 55 1.54E-06
IPR011011
Gene3D
G3DSA:3.30.40.10
301 354 54 1.10E-06
IPR013083
MobiDBLite
mobidb-lite
466 505 40 – –
Gene3D
G3DSA:1.10.10.60
588 657 70 1.70E-09
IPR009057
ProSiteProfiles
PS50090
588 651 64 7.526
IPR017877
SUPERFAMILY
SSF46689
590 652 63 4.31E-09
IPR009057
SMART
SM00717
592 653 62 0.0012
IPR001005
CDD
cd11660
594 652 59 5.84E-12 –
Pfam
PF13921
596 654 59 7.80E-06 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0324039.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0324039.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.