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Lj0g3v0332639.1

Overview

Field Value
Gene ID Lj0g3v0332639
Transcript ID Lj0g3v0332639.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pre-mRNA-processing factor 6-like [Cicer arietinum] gi|502167664|ref|XP_004514211.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
44 69 26 – –
SUPERFAMILY
SSF48452
74 216 143 9.80E-11
IPR011990
PANTHER
PTHR11246:SF1
81 243 163 2.90E-186
IPR027108
PANTHER
PTHR11246
81 243 163 2.90E-186 –
Gene3D
G3DSA:1.25.40.10
83 230 148 5.60E-07
IPR011990
SMART
SM00386
103 135 33 60
IPR003107
SMART
SM00386
164 196 33 69
IPR003107
SUPERFAMILY
SSF48452
248 484 237 3.45E-19
IPR011990
PANTHER
PTHR11246:SF1
264 723 460 2.90E-186
IPR027108
PANTHER
PTHR11246
264 723 460 2.90E-186 –
Gene3D
G3DSA:1.25.40.10
276 424 149 5.60E-07
IPR011990
SMART
SM00386
325 357 33 0.87
IPR003107
SMART
SM00386
393 425 33 36
IPR003107
Coils
Coil
422 442 21 – –
Gene3D
G3DSA:1.25.40.10
425 690 266 2.70E-17
IPR011990
SMART
SM00386
427 458 32 110
IPR003107
SMART
SM00386
460 492 33 12
IPR003107
SUPERFAMILY
SSF48452
493 689 197 1.02E-22
IPR011990
SMART
SM00386
503 535 33 0.51
IPR003107
SMART
SM00386
567 599 33 47
IPR003107
SMART
SM00386
631 663 33 54
IPR003107
SMART
SM00386
665 697 33 570
IPR003107

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj0g3v0332639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0332639.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.