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Lj1g3v0415480.1

Overview

Field Value
Gene ID Lj1g3v0415480
Transcript ID Lj1g3v0415480.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 38-like [Cicer arietinum] gi|502133980|ref|XP_004501958.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
3 107 105 8.70E-255 –
PANTHER
PTHR23315:SF98
3 107 105 8.70E-255 –
SUPERFAMILY
SSF57850
12 93 82 9.89E-18 –
Gene3D
G3DSA:3.30.40.10
23 92 70 3.40E-15
IPR013083
ProSiteProfiles
PS51698
23 96 74 31.501
IPR003613
Pfam
PF04564
25 92 68 2.60E-11
IPR003613
SMART
SM00504
27 89 63 5.10E-15
IPR003613
PANTHER
PTHR23315
140 490 351 8.70E-255 –
PANTHER
PTHR23315:SF98
140 490 351 8.70E-255 –
Gene3D
G3DSA:1.25.10.10
213 506 294 1.40E-48
IPR011989
CDD
cd00020
213 320 108 5.14E-04 –
SUPERFAMILY
SSF48371
213 489 277 4.68E-35
IPR016024
SMART
SM00185
281 321 41 6.2
IPR000225
CDD
cd00020
288 401 114 1.37E-09 –
Pfam
PF00514
322 361 40 3.00E-05
IPR000225
SMART
SM00185
322 362 41 4.2
IPR000225
SMART
SM00185
363 401 39 180
IPR000225
CDD
cd00020
369 485 117 2.69E-07 –
SMART
SM00185
402 445 44 0.027
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v0415480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0415480.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.