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Lj1g3v1914950.1

Overview

Field Value
Gene ID Lj1g3v1914950
Transcript ID Lj1g3v1914950.1
Lotus japonicus genome version MG20 v3.0
Description histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23430
1 130 130 7.30E-104 –
MobiDBLite
mobidb-lite
1 31 31 – –
SUPERFAMILY
SSF47113
4 111 108 3.46E-42
IPR009072
SMART
SM00414
15 134 120 1.30E-70
IPR002119
Pfam
PF00125
15 103 89 1.70E-18
IPR007125
Gene3D
G3DSA:1.10.20.10
19 133 115 2.20E-52
IPR009072
PRINTS
PR00620
25 47 23 2.40E-43
IPR002119
ProSitePatterns
PS00046
33 39 7 –
IPR032458
PRINTS
PR00620
55 70 16 2.40E-43
IPR002119
PRINTS
PR00620
70 83 14 2.40E-43
IPR002119
PRINTS
PR00620
84 98 15 2.40E-43
IPR002119
Pfam
PF16211
104 133 30 9.10E-11
IPR032454
PRINTS
PR00620
111 129 19 2.40E-43
IPR002119

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v1914950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1914950.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.