Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032458
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.304s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0110789.1
n.a. Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| chr0 48081339 48082491 -
2 domain predictions
 –
Lj0g3v0192519.1
n.a. Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| chr0 94135533 94136310 -
2 domain predictions
 –
Lj0g3v0200479.1
n.a. histone H2A [Zea mays] gi|195619692|gb|ACG31676.1| chr0 98888972 98889276 -
2 domain predictions
 –
Lj0g3v0324679.1
n.a. PREDICTED: protein H2A.7-like [Glycine max] gi|356543960|ref|XP_003540426.1| chr0 169718066 169718205 +
2 domain predictions
 –
Lj1g3v1914950.1
n.a. histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1| chr1 22787705 22788491 +
2 domain predictions
 –
Lj1g3v4921050.1
n.a. Histone H2A [Medicago truncatula] gi|357511939|ref|XP_003626258.1| chr1 59812451 59813410 +
2 domain predictions
 –
Lj1g3v4955240.1
n.a. PREDICTED: histone H2AX [Vitis vinifera] gi|225451096|ref|XP_002265878.1| chr1 60247514 60248262 +
2 domain predictions
 –
Lj3g3v1617180.1
n.a. PREDICTED: probable histone H2A.3 [Vitis vinifera] gi|225469181|ref|XP_002275483.1| chr3 20507905 20508532 +
2 domain predictions
 –
Lj5g3v0539920.1
n.a. histone 2 [Populus trichocarpa] gi|224092416|ref|XP_002309600.1| chr5 6402199 6405597 +
2 domain predictions
 –
LotjaGi1g1v0387400.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400 LjG1.1_chr1 87069093 87069648 +
2 domain predictions
 –
LotjaGi1g1v0575700.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I1H6W0|I1H6W0_BRADI Histone H2A; Found in the gene: LotjaGi1g1v0575700 LjG1.1_chr1 111117683 111118435 -
2 domain predictions
 –
LotjaGi1g1v0732900.1
n.a. Histone H2A; TAIR: AT1G08880.1 Histone superfamily protein; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|V7CZN0|V7CZN0_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0732900 LjG1.1_chr1 130448252 130456740 +
2 domain predictions
 –
LotjaGi1g1v0771500.1
n.a. Histone H2A; TAIR: AT5G27670.1 histone H2A 7; Swiss-Prot: sp|Q94F49|H2A5_ARATH Probable histone H2A.5; TrEMBL-Plants: tr|V7BPQ3|V7BPQ3_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0771500 LjG1.1_chr1 134421461 134422718 +
2 domain predictions
 –
LotjaGi1g1v0776300.1
n.a. Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 LjG1.1_chr1 134858711 134860875 +
2 domain predictions
 –
LotjaGi1g1v0776300.2
n.a. Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 LjG1.1_chr1 134858819 134859547 +
2 domain predictions
 –
LotjaGi1g1v0776300.3
n.a. Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 LjG1.1_chr1 134858971 134859547 +
2 domain predictions
 –
LotjaGi3g1v0233900.1
n.a. Histone H2A; TAIR: AT5G54640.1 Histone superfamily protein; Swiss-Prot: sp|Q9LD28|H2A6_ARATH Histone H2A.6; TrEMBL-Plants: tr|I1LUS3|I1LUS3_SOYBN Histone H2A; Found in the gene: LotjaGi3g1v0233900 LjG1.1_chr3 37025042 37026396 +
2 domain predictions
 –
LotjaGi3g1v0233900.2
n.a. Histone H2A; TAIR: AT4G27230.1 histone H2A 2; Swiss-Prot: sp|O81826|H2A3_ARATH Probable histone H2A.3; TrEMBL-Plants: tr|T2DMX9|T2DMX9_PHAVU Histone H2A; Found in the gene: LotjaGi3g1v0233900 LjG1.1_chr3 37025235 37025817 +
2 domain predictions
 –
LotjaGi3g1v0234200.1
n.a. Histone H2A; TAIR: AT1G51060.1 histone H2A 10; Swiss-Prot: sp|Q9C681|H2A1_ARATH Probable histone H2A.1; TrEMBL-Plants: tr|A0A1J7HRN0|A0A1J7HRN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0234200 LjG1.1_chr3 37102901 37104519 +
2 domain predictions
 –
LotjaGi3g1v0281000.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3SUS3|I3SUS3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281000 LjG1.1_chr3 56248106 56249187 -
2 domain predictions
 –
LotjaGi3g1v0281100.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3T2M3|I3T2M3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281100 LjG1.1_chr3 56259530 56260648 -
2 domain predictions
 –
LotjaGi3g1v0281600.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|Q9M531|H2A_EUPES Histone H2A; TrEMBL-Plants: tr|V4LCQ3|V4LCQ3_EUTSA Histone H2A; Found in the gene: LotjaGi3g1v0281600 LjG1.1_chr3 56352672 56353590 -
2 domain predictions
 –
LotjaGi3g1v0367900.1
n.a. Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|K3XMR4|K3XMR4_SETIT Histone H2A; Found in the gene: LotjaGi3g1v0367900 LjG1.1_chr3 75393073 75394058 +
2 domain predictions
 –
LotjaGi4g1v0137000_LC.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|D7SUM0|D7SUM0_VITVI Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC LjG1.1_chr4 20095336 20095880 -
2 domain predictions
 –
LotjaGi4g1v0266100.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3S6W2|I3S6W2_LOTJA Histone H2A; Found in the gene: LotjaGi4g1v0266100 LjG1.1_chr4 63112748 63114740 -
2 domain predictions
 –
LotjaGi5g1v0061500.1
n.a. Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SSH5|I3SSH5_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0061500 LjG1.1_chr5 10277112 10281143 +
2 domain predictions
 –