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IPR032458 is a Histone H2A conserved site.
<p>Histone H2A is a small, highly conserved nuclear protein that, together with 2 molecules each of histones H2B, H3 and H4, forms the eukaryotic nucleosome core [[cite:PUB00004448]]; the nucleosome octamer winds ~146 DNA base-pairs. This entry represents a conserved region in the N-terminal part of H2A. This region is conserved both in classical S-phase regulated H2A's and in variant histone H2A's which are synthesized throughout the cell cycle.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| | 15 | ||
| – | Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| | 15 | ||
| – | Histone H2A [Zea mays] gi|195619692|gb|ACG31676.1| | 8 | ||
| – | PREDICTED: protein H2A.7-like [Glycine max] gi|356543960|ref|XP_003540426.1| | 7 | ||
| – | Histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1| | 14 | ||
| – | Histone H2A [Medicago truncatula] gi|357511939|ref|XP_003626258.1| | 15 | ||
| – | PREDICTED: histone H2AX [Vitis vinifera] gi|225451096|ref|XP_002265878.1| | 15 | ||
| – | PREDICTED: probable histone H2A.3 [Vitis vinifera] gi|225469181|ref|XP_002275483.1| | 15 | ||
| – | Histone 2 [Populus trichocarpa] gi|224092416|ref|XP_002309600.1| | 15 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SBH0|I3SBH0_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0387400 | 15 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I1H6W0|I1H6W0_BRADI Histone H2A; Found in the gene: LotjaGi1g1v0575700 | 16 | ||
| – | Histone H2A; TAIR: AT1G08880.1 Histone superfamily protein; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|V7CZN0|V7CZN0_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0732900 | 16 | ||
| – | Histone H2A; TAIR: AT5G27670.1 histone H2A 7; Swiss-Prot: sp|Q94F49|H2A5_ARATH Probable histone H2A.5; TrEMBL-Plants: tr|V7BPQ3|V7BPQ3_PHAVU Histone H2A; Found in the gene: LotjaGi1g1v0771500 | 16 | ||
| – | Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 | 16 | ||
| – | Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 | 16 | ||
| – | Histone H2A; TAIR: AT1G54690.1 gamma histone variant H2AX; Swiss-Prot: sp|O65759|H2AX_CICAR Histone H2AX; TrEMBL-Plants: tr|I3SZ07|I3SZ07_LOTJA Histone H2A; Found in the gene: LotjaGi1g1v0776300 | 16 | ||
| – | Histone H2A; TAIR: AT5G54640.1 Histone superfamily protein; Swiss-Prot: sp|Q9LD28|H2A6_ARATH Histone H2A.6; TrEMBL-Plants: tr|I1LUS3|I1LUS3_SOYBN Histone H2A; Found in the gene: LotjaGi3g1v0233900 | 16 | ||
| – | Histone H2A; TAIR: AT4G27230.1 histone H2A 2; Swiss-Prot: sp|O81826|H2A3_ARATH Probable histone H2A.3; TrEMBL-Plants: tr|T2DMX9|T2DMX9_PHAVU Histone H2A; Found in the gene: LotjaGi3g1v0233900 | 16 | ||
| – | Histone H2A; TAIR: AT1G51060.1 histone H2A 10; Swiss-Prot: sp|Q9C681|H2A1_ARATH Probable histone H2A.1; TrEMBL-Plants: tr|A0A1J7HRN0|A0A1J7HRN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0234200 | 16 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3SUS3|I3SUS3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281000 | 16 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|I3T2M3|I3T2M3_LOTJA Histone H2A; Found in the gene: LotjaGi3g1v0281100 | 16 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|Q9M531|H2A_EUPES Histone H2A; TrEMBL-Plants: tr|V4LCQ3|V4LCQ3_EUTSA Histone H2A; Found in the gene: LotjaGi3g1v0281600 | 16 | ||
| – | Histone H2A; TAIR: AT5G02560.1 histone H2A 12; Swiss-Prot: sp|A2XZN0|H2A6_ORYSI Probable histone H2A.6; TrEMBL-Plants: tr|K3XMR4|K3XMR4_SETIT Histone H2A; Found in the gene: LotjaGi3g1v0367900 | 16 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q9C944|H2AV3_ARATH Probable histone H2A variant 3; TrEMBL-Plants: tr|D7SUM0|D7SUM0_VITVI Histone H2A; Found in the gene: LotjaGi4g1v0137000_LC | 14 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3S6W2|I3S6W2_LOTJA Histone H2A; Found in the gene: LotjaGi4g1v0266100 | 16 | ||
| – | Histone H2A; TAIR: AT1G52740.1 histone H2A protein 9; Swiss-Prot: sp|Q84MP7|H2AV3_ORYSJ Probable histone H2A variant 3; TrEMBL-Plants: tr|I3SSH5|I3SSH5_LOTJA Histone H2A; Found in the gene: LotjaGi5g1v0061500 | 16 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 3.85 |