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| Field | Value |
|---|---|
| Gene ID | Lj1g3v1932790 |
| Transcript ID | Lj1g3v1932790.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Potassium channel [Medicago truncatula] gi|357466431|ref|XP_003603500.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 17 | 17 | – | – | |
| PANTHER | 3 | 502 | 500 | 0 | – | |
| PANTHER | 3 | 502 | 500 | 0 | – | |
| Phobius | 18 | 26 | 9 | – | – | |
| Phobius | 27 | 30 | 4 | – | – | |
| Phobius | 31 | 53 | 23 | – | – | |
| SUPERFAMILY | 47 | 294 | 248 | 3.79E-43 | – | |
| Gene3D | 53 | 294 | 242 | 1.60E-44 | – | |
| Pfam | 53 | 294 | 242 | 4.60E-31 | ||
| Phobius | 54 | 72 | 19 | – | – | |
| TMHMM | 57 | 79 | 23 | – | – | |
| Phobius | 73 | 83 | 11 | – | – | |
| Phobius | 84 | 108 | 25 | – | – | |
| PRINTS | 88 | 98 | 11 | 2.90E-11 | ||
| TMHMM | 94 | 116 | 23 | – | – | |
| PRINTS | 99 | 108 | 10 | 2.90E-11 | ||
| Phobius | 109 | 192 | 84 | – | – | |
| TMHMM | 193 | 215 | 23 | – | – | |
| Phobius | 193 | 216 | 24 | – | – | |
| Phobius | 217 | 236 | 20 | – | – | |
| Phobius | 237 | 258 | 22 | – | – | |
| TMHMM | 238 | 260 | 23 | – | – | |
| PRINTS | 242 | 259 | 18 | 2.90E-11 | ||
| Phobius | 259 | 269 | 11 | – | – | |
| PRINTS | 268 | 279 | 12 | 2.90E-11 | ||
| Phobius | 270 | 288 | 19 | – | – | |
| TMHMM | 273 | 295 | 23 | – | – | |
| PRINTS | 286 | 295 | 10 | 2.90E-11 | ||
| Phobius | 289 | 623 | 335 | – | – | |
| SUPERFAMILY | 306 | 490 | 185 | 6.94E-38 | ||
| Gene3D | 307 | 360 | 54 | 2.20E-04 | – | |
| Gene3D | 361 | 485 | 125 | 6.70E-24 | ||
| ProSiteProfiles | 372 | 491 | 120 | 23.407 | ||
| SMART | 372 | 489 | 118 | 4.60E-23 | ||
| CDD | 372 | 485 | 114 | 4.99E-23 | – | |
| Pfam | 393 | 475 | 83 | 1.30E-14 | ||
| MobiDBLite | 516 | 552 | 37 | – | – | |
| Pfam | 554 | 622 | 69 | 3.60E-18 | ||
| ProSiteProfiles | 554 | 623 | 70 | 26.16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v1932790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v1932790.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.