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Lj1g3v2624830.1

Overview

Field Value
Gene ID Lj1g3v2624830
Transcript ID Lj1g3v2624830.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribosomal RNA small subunit methyltransferase A-like [Glycine max] gi|356568329|ref|XP_003552364.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11727:SF11
8 348 341 2.30E-207 –
PANTHER
PTHR11727
8 348 341 2.30E-207
IPR001737
Gene3D
G3DSA:3.40.50.150
61 273 213 2.60E-49
IPR029063
SUPERFAMILY
SSF53335
74 347 274 2.50E-53
IPR029063
TIGRFAM
TIGR00755
76 344 269 7.30E-57
IPR011530
ProSiteProfiles
PS51689
76 348 273 61.551
IPR001737
Pfam
PF00398
77 346 270 1.50E-40
IPR001737
SMART
SM00650
90 274 185 3.20E-49
IPR020598
ProSitePatterns
PS01131
106 133 28 –
IPR020596
Gene3D
G3DSA:1.10.8.100
280 347 68 5.50E-18
IPR023165

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000154
Biological process RRNA modification The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0000179
Molecular function RRNA (adenine-N6,N6-)-dimethyltransferase activity Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.
Subterm of
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008649
Molecular function RRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj1g3v2624830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2624830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.