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Lj1g3v2739210.1

Overview

Field Value
Gene ID Lj1g3v2739210
Transcript ID Lj1g3v2739210.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315:SF49
1 610 610 0 –
MobiDBLite
mobidb-lite
1 32 32 – –
PANTHER
PTHR23315
1 610 610 0 –
Gene3D
G3DSA:1.25.10.10
118 228 111 4.20E-58
IPR011989
Coils
Coil
121 141 21 – –
Pfam
PF04564
249 309 61 2.90E-19
IPR003613
SUPERFAMILY
SSF57850
250 314 65 7.77E-24 –
Gene3D
G3DSA:3.30.40.10
250 310 61 9.50E-27
IPR013083
SMART
SM00504
250 305 56 2.00E-23
IPR003613
ProSiteProfiles
PS51698
250 312 63 27.963
IPR003613
SUPERFAMILY
SSF48371
329 607 279 1.26E-45
IPR016024
CDD
cd00020
332 441 110 2.37E-15 –
Gene3D
G3DSA:1.25.10.10
332 607 276 4.20E-58
IPR011989
SMART
SM00185
361 401 41 1.10E-08
IPR000225
Pfam
PF00514
361 400 40 1.60E-11
IPR000225
ProSiteProfiles
PS50176
372 414 43 14.892
IPR000225
SMART
SM00185
402 442 41 74
IPR000225
SMART
SM00185
443 483 41 0.0043
IPR000225
CDD
cd00020
448 565 118 1.07E-07 –
ProSiteProfiles
PS50176
454 496 43 9.222
IPR000225
SMART
SM00185
484 524 41 1.5
IPR000225
SMART
SM00185
525 565 41 15
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj1g3v2739210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2739210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.