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Lj1g3v2741270.1

Overview

Field Value
Gene ID Lj1g3v2741270
Transcript ID Lj1g3v2741270.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 15-like [Glycine max] gi|356530052|ref|XP_003533598.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
1 189 189 5.10E-123 –
PANTHER
PTHR23315:SF49
1 189 189 5.10E-123 –
SUPERFAMILY
SSF57850
23 99 77 1.12E-32 –
ProSiteProfiles
PS51698
23 97 75 43.355
IPR003613
Pfam
PF04564
24 94 71 6.00E-27
IPR003613
Gene3D
G3DSA:3.30.40.10
25 75 51 1.60E-20
IPR013083
SMART
SM00504
27 90 64 8.60E-35
IPR003613
Gene3D
G3DSA:1.25.10.10
76 187 112 4.00E-22
IPR011989
SUPERFAMILY
SSF48371
117 185 69 5.38E-14
IPR016024
CDD
cd00020
117 187 71 3.16E-13 –
Pfam
PF00514
146 185 40 3.00E-12
IPR000225
SMART
SM00185
146 186 41 1.10E-08
IPR000225
ProSiteProfiles
PS50176
157 189 33 13.037
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj1g3v2741270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2741270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.