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Lj1g3v3137940.1

Overview

Field Value
Gene ID Lj1g3v3137940
Transcript ID Lj1g3v3137940.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max] gi|356523718|ref|XP_003530482.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
379 410 32 – –
PANTHER
PTHR23081
556 1240 685 0 –
PANTHER
PTHR23081:SF2
556 1240 685 0 –
MobiDBLite
mobidb-lite
694 768 75 – –
MobiDBLite
mobidb-lite
858 891 34 – –
Gene3D
G3DSA:3.40.50.1000
921 1144 224 1.60E-34
IPR023214
SUPERFAMILY
SSF56784
923 1097 175 6.11E-33
IPR023214
TIGRFAM
TIGR02250
927 1090 164 5.50E-50
IPR011947
ProSiteProfiles
PS50969
927 1107 181 29.102
IPR004274
SMART
SM00577
930 1094 165 2.20E-53
IPR004274
Pfam
PF03031
932 1088 157 2.90E-23
IPR004274
ProSiteProfiles
PS50172
1150 1242 93 11.17
IPR001357
SMART
SM00292
1152 1232 81 1.60E-07
IPR001357
Pfam
PF00533
1152 1227 76 9.50E-06
IPR001357
SUPERFAMILY
SSF52113
1154 1241 88 2.47E-17
IPR001357
CDD
cd00027
1157 1228 72 1.18E-06
IPR001357
Gene3D
G3DSA:3.40.50.10190
1175 1242 68 2.80E-13
IPR001357

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004721
Molecular function Phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v3137940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3137940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.