Domain Predictions — View

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PF13831

Source: Pfam

Description

PHD-finger

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0062699.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] gi\|356518627\|ref\|XP_003527980.1\|	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS51566 PTHR13793 PTHR13793:SF5 SM00249 SM00317 SSF57903 SSF63748 SSF82199 cd15495 cd15517 cd15663	31
Lj1g3v0749150.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein Jade-1 [Medicago truncatula] gi\|357461689\|ref\|XP_003601126.1\|	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 NON_CYTOPLASMIC_DOMAIN PF13831 PF13832 PS01359 PS50016 PTHR13793 PTHR13793:SF96 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00249 SSF57903 SignalP-noTM_EUK mobidb-lite	21
Lj1g3v0749150.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein Jade-1 [Medicago truncatula] gi\|357461689\|ref\|XP_003601126.1\|	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 NON_CYTOPLASMIC_DOMAIN PF13831 PF13832 PS01359 PS50016 PTHR13793 PTHR13793:SF96 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00249 SSF57903 SignalP-noTM_EUK mobidb-lite	21
Lj1g3v3139990.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi\|356568903\|ref\|XP_003552647.1\|	Domains G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR000313 IPR001965 IPR003888 IPR003889 IPR011011 IPR013083 IPR019786 IPR019787 PF00855 PF05964 PF05965 PF13831 PF13832 PS01359 PS50016 PS50812 PS51542 PS51543 PTHR13793 PTHR13793:SF100 SM00249 SM00293 SM00541 SM00542 SSF57903 SSF63748 cd15494 mobidb-lite	30
Lj1g3v5034780.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX3-like [Cicer arietinum] gi\|502113957\|ref\|XP_004494815.1\|	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51566 PTHR13793 PTHR13793:SF92 SM00249 SM00293 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 mobidb-lite	33
Lj3g3v2441840.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi\|356522510\|ref\|XP_003529889.1\|	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 PF00628 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50868 PS51566 PTHR13793 PTHR13793:SF92 SM00249 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517	30
Lj3g3v2441840.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi\|356522510\|ref\|XP_003529889.1\|	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 PF00628 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50868 PS51566 PTHR13793 PTHR13793:SF92 SM00249 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517	30
LotjaGi1g1v0226000_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp\|Q8GZ42\|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr\|A0A151TYG2\|A0A151TYG2_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0226000_LC	Domains G3DSA:2.170.270.10 G3DSA:3.30.40.10 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR041955 IPR042011 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF134 SM00249 SM00317 SM00508 SSF57903 SSF82199 cd15495 cd15663	31
LotjaGi1g1v0226000_LC.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp\|Q8GZ42\|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr\|A0A151TYG2\|A0A151TYG2_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0226000_LC	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR042011 PF13831 PS01359 PS50016 PTHR13793 PTHR13793:SF132 SM00249 SSF57903 cd15495	15
LotjaGi1g1v0249800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phd finger protein, putative; TAIR: AT1G77800.1 PHD finger family protein; Swiss-Prot: sp\|Q7YZH1\|RNO_DROME PHD finger protein rhinoceros; TrEMBL-Plants: tr\|A0A0R0KNZ6\|A0A0R0KNZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0249800	Domains Coil G3DSA:3.30.40.10 IPR001965 IPR002219 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 NON_CYTOPLASMIC_DOMAIN PF13831 PF13832 PS01359 PS50016 PS50081 PS51805 PTHR13793 PTHR13793:SF96 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00249 SSF57903 SignalP-noTM cd15571 mobidb-lite	27
LotjaGi1g1v0284200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp\|Q8GZ42\|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr\|I1JYS9\|I1JYS9_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0284200	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR041955 IPR042011 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF134 SM00249 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517 cd15663	38
LotjaGi1g1v0529500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp\|P0CB22\|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr\|A0A151TCT2\|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.160.360 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR003888 IPR003889 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 IPR041956 IPR042010 PF00855 PF00856 PF05964 PF05965 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51542 PS51543 PS51805 PTHR13793 PTHR13793:SF140 SM00249 SM00293 SM00317 SM00508 SM00541 SM00542 SSF57903 SSF63748 SSF82199 cd15494 cd15662	44
LotjaGi1g1v0529500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp\|P0CB22\|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr\|A0A151TCT2\|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.160.360 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR003888 IPR003889 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 IPR041956 IPR042010 PF00855 PF00856 PF05964 PF05965 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51542 PS51543 PS51805 PTHR13793 PTHR13793:SF140 SM00249 SM00293 SM00317 SM00508 SM00541 SM00542 SSF57903 SSF63748 SSF82199 cd15494 cd15662 mobidb-lite	45
LotjaGi1g1v0529500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp\|P0CB22\|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr\|A0A151TCT2\|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.160.360 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR003888 IPR003889 IPR011011 IPR013083 IPR019786 IPR019787 IPR034732 IPR041956 IPR042010 PF00855 PF00856 PF05964 PF05965 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51542 PS51543 PS51805 PTHR13793 PTHR13793:SF140 SM00249 SM00293 SM00317 SM00508 SM00541 SM00542 SSF57903 SSF63748 SSF82199 cd15494 cd15662 mobidb-lite	45
LotjaGi3g1v0394900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp\|Q9M364\|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr\|A0A151SIL1\|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR042011 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF141 SM00249 SM00293 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517 mobidb-lite	38

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.67