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Lj1g3v3330210.1

Overview

Field Value
Gene ID Lj1g3v3330210
Transcript ID Lj1g3v3330210.1
Lotus japonicus genome version MG20 v3.0
Description Cytoplasmic tRNA 2-thiolation protein [Medicago truncatula] gi|357467587|ref|XP_003604078.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11807
7 324 318 7.70E-181 –
PANTHER
PTHR11807:SF12
7 324 318 7.70E-181 –
PIRSF
PIRSF004976
8 320 313 4.10E-119
IPR012089
Hamap
MF_03053
11 323 313 50.683
IPR000541
SUPERFAMILY
SSF52402
46 277 232 6.17E-50 –
Gene3D
G3DSA:3.40.50.620
49 228 180 2.80E-16
IPR014729
CDD
cd01993
60 246 187 5.56E-87 –
Pfam
PF01171
61 252 192 7.20E-15
IPR011063
Pfam
PF16503
288 319 32 1.40E-18
IPR032442
MobiDBLite
mobidb-lite
326 349 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000049
Molecular function TRNA binding Interacting selectively and non-covalently with transfer RNA.
Subterm of
GO:0002098
Biological process TRNA wobble uridine modification The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0034227
Biological process TRNA thio-modification The addition a sulfur atom to a nucleotide in a tRNA molecule.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v3330210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3330210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.