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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3833880 |
| Transcript ID | Lj1g3v3833880.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Germin-like protein subfamily 1 member [Medicago truncatula] gi|357468889|ref|XP_003604729.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| PANTHER | 3 | 206 | 204 | 5.90E-135 | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| PANTHER | 3 | 206 | 204 | 5.90E-135 | – | |
| Phobius | 15 | 20 | 6 | – | – | |
| Phobius | 21 | 206 | 186 | – | – | |
| SUPERFAMILY | 22 | 206 | 185 | 4.26E-42 | ||
| Gene3D | 22 | 206 | 185 | 1.20E-62 | ||
| SMART | 59 | 201 | 143 | 5.70E-28 | ||
| Pfam | 63 | 206 | 144 | 1.20E-46 | ||
| ProSitePatterns | 102 | 115 | 14 | – | ||
| PRINTS | 107 | 127 | 21 | 4.90E-28 | ||
| PRINTS | 142 | 162 | 21 | 4.90E-28 | ||
| PRINTS | 175 | 190 | 16 | 4.90E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of Lj1g3v3833880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3833880.1, powered by CORGI.
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