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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4104820 |
| Transcript ID | Lj1g3v4104820.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 10-like [Cicer arietinum] gi|502119079|ref|XP_004496497.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | – | – | |
| PANTHER | 9 | 902 | 894 | 0 | – | |
| PANTHER | 9 | 902 | 894 | 0 | – | |
| Phobius | 29 | 51 | 23 | – | – | |
| TMHMM | 29 | 51 | 23 | – | – | |
| Phobius | 52 | 71 | 20 | – | – | |
| TMHMM | 72 | 91 | 20 | – | – | |
| Phobius | 72 | 93 | 22 | – | – | |
| Phobius | 94 | 107 | 14 | – | – | |
| TMHMM | 106 | 128 | 23 | – | – | |
| Phobius | 108 | 128 | 21 | – | – | |
| Phobius | 129 | 139 | 11 | – | – | |
| Phobius | 140 | 161 | 22 | – | – | |
| TMHMM | 140 | 162 | 23 | – | – | |
| Phobius | 162 | 220 | 59 | – | – | |
| TMHMM | 166 | 188 | 23 | – | – | |
| Phobius | 221 | 238 | 18 | – | – | |
| Phobius | 239 | 306 | 68 | – | – | |
| Gene3D | 296 | 604 | 309 | 7.90E-23 | – | |
| SUPERFAMILY | 296 | 601 | 306 | 8.89E-31 | ||
| Phobius | 307 | 333 | 27 | – | – | |
| Pfam | 308 | 573 | 266 | 2.70E-23 | ||
| ProSiteProfiles | 309 | 588 | 280 | 30.645 | ||
| TMHMM | 313 | 335 | 23 | – | – | |
| Phobius | 334 | 344 | 11 | – | – | |
| Phobius | 345 | 362 | 18 | – | – | |
| Phobius | 363 | 438 | 76 | – | – | |
| TMHMM | 438 | 460 | 23 | – | – | |
| Phobius | 439 | 460 | 22 | – | – | |
| Phobius | 461 | 902 | 442 | – | – | |
| TMHMM | 533 | 555 | 23 | – | – | |
| SUPERFAMILY | 618 | 846 | 229 | 1.38E-55 | ||
| CDD | 623 | 823 | 201 | 2.72E-100 | – | |
| ProSiteProfiles | 625 | 846 | 222 | 22.022 | ||
| Gene3D | 626 | 851 | 226 | 2.20E-65 | ||
| Pfam | 641 | 775 | 135 | 1.30E-22 | ||
| SMART | 650 | 823 | 174 | 1.20E-15 | ||
| ProSitePatterns | 748 | 762 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v4104820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4104820.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.