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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4515400 |
| Transcript ID | Lj1g3v4515400.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U-box domain-containing protein 3-like [Glycine max] gi|356572260|ref|XP_003554287.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 326 | 326 | 0 | – | |
| PANTHER | 1 | 326 | 326 | 0 | – | |
| Coils | 190 | 217 | 28 | – | – | |
| SUPERFAMILY | 240 | 317 | 78 | 9.08E-27 | – | |
| ProSiteProfiles | 241 | 315 | 75 | 37.561 | ||
| Pfam | 242 | 313 | 72 | 3.40E-22 | ||
| Gene3D | 244 | 293 | 50 | 1.10E-14 | ||
| SMART | 245 | 308 | 64 | 9.60E-31 | ||
| Gene3D | 294 | 339 | 46 | 8.20E-72 | ||
| MobiDBLite | 347 | 407 | 61 | – | – | |
| PANTHER | 394 | 487 | 94 | 0 | – | |
| PANTHER | 394 | 487 | 94 | 0 | – | |
| MobiDBLite | 429 | 463 | 35 | – | – | |
| PANTHER | 504 | 799 | 296 | 0 | – | |
| PANTHER | 504 | 799 | 296 | 0 | – | |
| Gene3D | 509 | 790 | 282 | 8.20E-72 | ||
| SUPERFAMILY | 509 | 787 | 279 | 5.76E-47 | ||
| CDD | 515 | 624 | 110 | 3.83E-12 | – | |
| SMART | 544 | 584 | 41 | 0.84 | ||
| Pfam | 547 | 583 | 37 | 2.00E-04 | ||
| ProSiteProfiles | 555 | 597 | 43 | 9.922 | ||
| Pfam | 585 | 624 | 40 | 2.00E-06 | ||
| SMART | 585 | 625 | 41 | 0.02 | ||
| CDD | 590 | 706 | 117 | 6.24E-15 | – | |
| ProSiteProfiles | 596 | 638 | 43 | 9.677 | ||
| SMART | 626 | 666 | 41 | 0.7 | ||
| Pfam | 628 | 665 | 38 | 7.30E-06 | ||
| ProSiteProfiles | 637 | 679 | 43 | 11.707 | ||
| SMART | 667 | 706 | 40 | 0.01 | ||
| CDD | 674 | 787 | 114 | 9.56E-08 | – | |
| ProSiteProfiles | 678 | 719 | 42 | 10.587 | ||
| SMART | 707 | 747 | 41 | 8.2 | ||
| Pfam | 709 | 746 | 38 | 3.30E-04 | ||
| SMART | 749 | 789 | 41 | 300 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of Lj1g3v4515400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4515400.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.