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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4528420 |
| Transcript ID | Lj1g3v4528420.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 5-like [Glycine max] gi|356505072|ref|XP_003521316.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | – | – | |
| PANTHER | 3 | 1518 | 1516 | 0 | – | |
| PANTHER | 3 | 1518 | 1516 | 0 | – | |
| TMHMM | 15 | 37 | 23 | – | – | |
| Phobius | 18 | 38 | 21 | – | – | |
| Phobius | 39 | 76 | 38 | – | – | |
| Phobius | 77 | 95 | 19 | – | – | |
| TMHMM | 80 | 102 | 23 | – | – | |
| Phobius | 96 | 114 | 19 | – | – | |
| Phobius | 115 | 136 | 22 | – | – | |
| TMHMM | 117 | 136 | 20 | – | – | |
| Phobius | 137 | 147 | 11 | – | – | |
| TMHMM | 148 | 170 | 23 | – | – | |
| Phobius | 148 | 167 | 20 | – | – | |
| Phobius | 168 | 178 | 11 | – | – | |
| Phobius | 179 | 202 | 24 | – | – | |
| TMHMM | 185 | 207 | 23 | – | – | |
| Phobius | 203 | 317 | 115 | – | – | |
| Gene3D | 304 | 608 | 305 | 1.80E-30 | – | |
| SUPERFAMILY | 304 | 609 | 306 | 4.97E-38 | ||
| TMHMM | 316 | 338 | 23 | – | – | |
| ProSiteProfiles | 318 | 595 | 278 | 37.804 | ||
| Phobius | 318 | 339 | 22 | – | – | |
| Pfam | 319 | 583 | 265 | 1.70E-27 | ||
| Phobius | 340 | 372 | 33 | – | – | |
| TMHMM | 353 | 375 | 23 | – | – | |
| Phobius | 373 | 393 | 21 | – | – | |
| Phobius | 394 | 425 | 32 | – | – | |
| Phobius | 426 | 447 | 22 | – | – | |
| TMHMM | 426 | 448 | 23 | – | – | |
| Phobius | 448 | 452 | 5 | – | – | |
| TMHMM | 453 | 475 | 23 | – | – | |
| Phobius | 453 | 473 | 21 | – | – | |
| Phobius | 474 | 530 | 57 | – | – | |
| TMHMM | 531 | 553 | 23 | – | – | |
| Phobius | 531 | 552 | 22 | – | – | |
| Phobius | 553 | 557 | 5 | – | – | |
| TMHMM | 557 | 579 | 23 | – | – | |
| Phobius | 558 | 579 | 22 | – | – | |
| Phobius | 580 | 953 | 374 | – | – | |
| SUPERFAMILY | 626 | 852 | 227 | 1.20E-54 | ||
| ProSiteProfiles | 629 | 853 | 225 | 22.863 | ||
| CDD | 629 | 829 | 201 | 5.34E-105 | – | |
| Gene3D | 630 | 861 | 232 | 4.50E-64 | ||
| Pfam | 648 | 782 | 135 | 4.10E-19 | ||
| SMART | 657 | 838 | 182 | 7.70E-14 | ||
| ProSitePatterns | 755 | 769 | 15 | – | ||
| Coils | 913 | 933 | 21 | – | – | |
| Gene3D | 949 | 1253 | 305 | 3.10E-55 | – | |
| TMHMM | 949 | 971 | 23 | – | – | |
| Phobius | 954 | 977 | 24 | – | – | |
| SUPERFAMILY | 955 | 1255 | 301 | 4.58E-48 | ||
| Pfam | 958 | 1200 | 243 | 2.40E-26 | ||
| ProSiteProfiles | 958 | 1228 | 271 | 34.552 | ||
| Phobius | 978 | 996 | 19 | – | – | |
| TMHMM | 991 | 1013 | 23 | – | – | |
| Phobius | 997 | 1026 | 30 | – | – | |
| Phobius | 1027 | 1081 | 55 | – | – | |
| Phobius | 1082 | 1111 | 30 | – | – | |
| TMHMM | 1083 | 1105 | 23 | – | – | |
| Phobius | 1112 | 1130 | 19 | – | – | |
| Phobius | 1131 | 1149 | 19 | – | – | |
| Phobius | 1150 | 1160 | 11 | – | – | |
| Phobius | 1161 | 1180 | 20 | – | – | |
| Phobius | 1181 | 1185 | 5 | – | – | |
| Phobius | 1186 | 1202 | 17 | – | – | |
| Phobius | 1203 | 1521 | 319 | – | – | |
| SUPERFAMILY | 1266 | 1506 | 241 | 1.78E-67 | ||
| CDD | 1273 | 1493 | 221 | 1.67E-124 | – | |
| ProSiteProfiles | 1275 | 1509 | 235 | 17.367 | ||
| Gene3D | 1275 | 1511 | 237 | 4.50E-64 | ||
| Pfam | 1292 | 1440 | 149 | 3.10E-30 | ||
| SMART | 1301 | 1486 | 186 | 2.80E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v4528420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4528420.1, powered by CORGI.
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