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Lj1g3v4862820.1

Overview

Field Value
Gene ID Lj1g3v4862820
Transcript ID Lj1g3v4862820.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein PROLIFERA-like [Glycine max] gi|356505629|ref|XP_003521592.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11630
1 89 89 0 –
PANTHER
PTHR11630:SF26
1 89 89 0
IPR008050
SUPERFAMILY
SSF50249
15 92 78 3.08E-62
IPR012340
Gene3D
G3DSA:3.30.1640.10
15 89 75 4.50E-05 –
Pfam
PF14551
16 132 117 1.30E-15
IPR027925
PANTHER
PTHR11630:SF26
109 714 606 0
IPR008050
PANTHER
PTHR11630
109 714 606 0 –
PRINTS
PR01663
122 134 13 9.70E-20
IPR008050
SUPERFAMILY
SSF50249
131 296 166 3.08E-62
IPR012340
SMART
SM00350
141 640 500 4.80E-301
IPR031327
Gene3D
G3DSA:2.40.50.140
144 171 28 5.40E-27 –
Pfam
PF17207
145 275 131 2.90E-32
IPR033762
PRINTS
PR01663
160 171 12 9.70E-20
IPR008050
PRINTS
PR01663
178 189 12 9.70E-20
IPR008050
PRINTS
PR01663
195 207 13 9.70E-20
IPR008050
Gene3D
G3DSA:2.40.50.140
227 299 73 5.40E-27 –
PRINTS
PR01663
287 297 11 9.70E-20
IPR008050
Pfam
PF00493
316 638 323 1.20E-131
IPR001208
ProSiteProfiles
PS50051
328 534 207 95.498
IPR001208
Gene3D
G3DSA:3.40.50.300
338 517 180 5.40E-41
IPR027417
SUPERFAMILY
SSF52540
338 650 313 2.88E-42
IPR027417
CDD
cd00009
359 514 156 5.99E-04 –
PRINTS
PR01657
369 384 16 1.10E-32
IPR001208
PRINTS
PR01657
429 443 15 1.10E-32
IPR001208
ProSitePatterns
PS00847
437 445 9 –
IPR018525
PRINTS
PR01657
457 470 14 1.10E-32
IPR001208
PRINTS
PR01657
481 493 13 1.10E-32
IPR001208
PRINTS
PR01657
508 516 9 1.10E-32
IPR001208

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of
GO:0006270
Biological process DNA replication initiation The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate.
Subterm of
Part of
GO:0042555
Cellular component MCM complex A hexameric protein complex required for the initiation and regulation of DNA replication.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4862820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4862820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.