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| Field | Value |
|---|---|
| Gene ID | Lj1g3v5020940 |
| Transcript ID | Lj1g3v5020940.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi|356556778|ref|XP_003546699.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 216 | 216 | – | – | |
| PANTHER | 20 | 881 | 862 | 0 | ||
| PANTHER | 20 | 881 | 862 | 0 | ||
| SMART | 88 | 234 | 147 | 5.90E-47 | ||
| Pfam | 99 | 234 | 136 | 2.00E-32 | ||
| Phobius | 217 | 237 | 21 | – | – | |
| Phobius | 238 | 901 | 664 | – | – | |
| Coils | 329 | 349 | 21 | – | – | |
| MobiDBLite | 391 | 411 | 21 | – | – | |
| SMART | 417 | 618 | 202 | 2.00E-88 | ||
| Pfam | 417 | 618 | 202 | 4.50E-62 | ||
| SUPERFAMILY | 425 | 620 | 196 | 2.65E-58 | ||
| Gene3D | 425 | 608 | 184 | 6.20E-59 | ||
| Gene3D | 734 | 883 | 150 | 1.10E-45 | ||
| SUPERFAMILY | 740 | 880 | 141 | 8.50E-44 | ||
| Pfam | 742 | 873 | 132 | 8.00E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | G1/S transition of mitotic cell cycle | The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of Lj1g3v5020940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v5020940.1, powered by CORGI.
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