Domain Predictions — View

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PTHR13742

Source: PANTHER

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006357 View details of GO:0006357 AmiGO InterPro QuickGO	Biological process	Regulation of transcription by RNA polymerase II	Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.	Subterm of GO:0006355 Regulates GO:0006366
GO:0051726 View details of GO:0051726 AmiGO InterPro QuickGO	Biological process	Regulation of cell cycle	Any process that modulates the rate or extent of progression through the cell cycle.	Subterm of GO:0050794 Regulates GO:0007049

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v5020940.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi\|356556778\|ref\|XP_003546699.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR013763 IPR015652 IPR024599 IPR028309 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF17 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
Lj1g3v5020940.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi\|356556778\|ref\|XP_003546699.1\|	Domains IPR015030 IPR015652 IPR028309 PF08934 PTHR13742 PTHR13742:SF17 mobidb-lite	7
Lj3g3v1896330.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: retinoblastoma-related protein 1-like [Glycine max] gi\|356556778\|ref\|XP_003546699.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR013763 IPR015652 IPR024599 IPR028309 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF17 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.1 retinoblastoma-related 1; Swiss-Prot: sp\|A9UL14\|RBR_MEDSA Retinoblastoma-related protein; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi1g1v0787400.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|A0A0R0GFY6\|A0A0R0GFY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0787400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|I1MIM1\|I1MIM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi3g1v0315700.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retinoblastoma-related protein; TAIR: AT3G12280.2 retinoblastoma-related 1; Swiss-Prot: sp\|Q9SLZ4\|RBR1_PEA Retinoblastoma-related protein 1; TrEMBL-Plants: tr\|A0A0R0GFY6\|A0A0R0GFY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.472.10 IPR002719 IPR002720 IPR015652 IPR024599 IPR028309 IPR036915 NON_CYTOPLASMIC_DOMAIN PF01857 PF01858 PF11934 PTHR13742 PTHR13742:SF30 SM01367 SM01368 SSF47954 TMhelix TRANSMEMBRANE mobidb-lite	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.14